SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14245

Length: 255 nt

UniGene Fasta

>biog3_v1.0_unigene14245
ACATCCCTTGATCAAGCATTGGGTATCTGTTCTTAGAAATGAGCAAAGTCCGTGCCCTATTTTTAAAAGCGCGATGGCAGAACTGGGGAGGCTTCTTATCTATGAGGCATCAAGGGATTGGTTGCCCATTGTTAGCGGTGAGATCCAAACACCACTAGGAGCTGCATCTGTTGAGTTCATTGATCCAAGAGAGCCCGTGATGATAGTGCCAGTTTTGAGAGCTGGTCTCGTATTGGTGGAGCATGCTGCATCATT

Ace file of the UniGene biog3_v1.0_unigene14245

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene586	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Uracil phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SV47_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	uracil phosphoribosyltransferase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Uracil phosphoribosyltransferase.	EC:2.4.2.9	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyrimidine metabolism	00240		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	84%

Source	KEGGs	Term	Identity
Blast2go	Pentose phosphate pathway	00030	84%
Blast2go	Lipopolysaccharide biosynthesis	00540	84%
Blast2go	Nicotinate and nicotinamide metabolism	00760	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside metabolic process	GO:0009116	Biological Process	84%
Blast2go	uracil salvage	GO:0006223	Biological Process	84%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	84%
Blast2go	developmental process	GO:0032502	Biological Process	84%
Blast2go	uracil phosphoribosyltransferase activity	GO:0004845	Molecular Function	84%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	GTP binding	GO:0005525	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	0.0	-
Sma3	Uracil phosphoribosyl transferase	IPR005765	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NPV6

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 84 - 150

Fln protein: HPLIKHWVSVLRNEQSPCPIFKSAMAELGRLLIYEASRDWLPIVSGEIQTPLGAASVEFIDPREPVMIVPVLRAGLVLVEHAAS

Protein Length: 85

Fln nts: ACATCCCTTGATCAAGCATTGGGTATCTGTTCTTAGAAATGAGCAAAGTCCGTGCCCTATTTTTAAAAGCGCGATGGCAGAACTGGGGAGGCTTCTTATCTATGAGGCATCAAGGGATTGGTTGCCCATTGTTAGCGGTGAGATCCAAACACCACTAGGAGCTGCATCTGTTGAGTTCATTGATCCAAGAGAGCCCGTGATGATAGTGCCAGTTTTGAGAGCTGGTCTCGTATTGGTGGAGCATGCTGCATCATT

Fln Alignment:

biogeco3_mira_c6918___HPLIKHWVSVLRNEQSPCPIFKSAMAELGRLLIYEASRDWLPIVSGEIQTPLGAASVEFIDPREPVMI
A9NPV6__________________HPLIKHWISVLRNEQSPCPIFKSAMAELGRLLIYEASRDWLPIVSGEIQTPLGVASVEFIDPREPVTV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain