SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14196

Length: 442 nt

UniGene Fasta

>biog3_v1.0_unigene14196
GACAGCAGAGTGTGGAGGCACACGGGCACAGATCAGATCAGCTCATTCCATCTCAATAATCGCAACTGAGAAGAATGGATCACGCGGCGGAAGCCCATCGAACAGACTTGATGACTATTACCCGCTTTGTGCTAAATGAACAGTCCAAGCACCCGGAAGCTCGCGGGGATTTCACAATTCTGCTGAGCCACATAGTCCTTGGCTGCAAATTCGTATGCTCTTCTGTCAGTAAGGCAGGACTTGCTAAGCTCATTGGTCTTGCGGGAGAGGTCAACGTGCAGGGAGAGCAACAAAAAATTAGATGTACTATCGAATGAAGTATTCATCAAGGCTCTCATAAGCAGTGGACGTACGAGCATTCTTGTTTCTGAGGAGGATGAGCAGGCAACCTTTGTTGAGCCATCACAACGAGGGAGGTACTGTGTAGTTTTTGATCCGCTTG

Ace file of the UniGene biog3_v1.0_unigene14196

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13989	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Fructose-1,6-bisphosphatase, cytosolic; Short=FBPase; AltName: Full=CY-F1; AltName: Full=D-fructose-1,6-bisphosphate 1-phosphohydrolase emb\|CAA54265.1\| fructose-1,6-bisphosphatase [Solanum tuberosum]	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	fructose- -bisphosphatase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fructose-bisphosphatase.	EC:3.1.3.11	-	0.0	92%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		92%
Blast2go	Pentose phosphate pathway	00030		92%
Blast2go	Fructose and mannose metabolism	00051		92%
Blast2go	Methane metabolism	00680		92%
Blast2go	Carbon fixation in photosynthetic organisms	00710		92%
Blast2go	Biosynthesis of phenylpropanoids	01061		92%
Blast2go	Metabolic pathways	01100		92%
Blast2go	Biosynthesis of secondary metabolites	01110		92%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	92%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	92%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	metal ion binding	GO:0046872	Molecular Function	92%
Blast2go	fructose 1,6-bisphosphate 1-phosphatase activity	GO:0042132	Molecular Function	92%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Fructose-1,6-bisphosphatase class 1/Sedoheputulose-1,7-bisphosphatase	IPR000146	-	0.0	-
Sma3		IPR017955	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKA9

Fln msg: Overlapping hits, possible frame ERROR between 296 and 283, Distance to subject end: 219 aas, your sequence is shorter than subject: 123 - 342

Fln protein: MDHAAEAHRTDLMTITRFVLNEQSKHPEARGDFTILLSHIVLGCKFVCSSVSKAGLAKLIGLAGEVNVQxxxxxxLDVLSNEVFIKALISSGRTSILVSEEDEQATFVEPSQRGRYCVVFDPL

Protein Length: 124

Fln nts: GACAGCAGAGTGTGGAGGCACACGGGCACAGATCAGATCAGCTCATTCCATCTCAATAATCGCAACTGAGAAGA_-_ATGGATCACGCGGCGGAAGCCCATCGAACAGACTTGATGACTATTACCCGCTTTGTGCTAAATGAACAGTCCAAGCACCCGGAAGCTCGCGGGGATTTCACAATTCTGCTGAGCCACATAGTCCTTGGCTGCAAATTCGTATGCTCTTCTGTCAGTAAGGCAGGACTTGCTAAGCTCATTGGTCTTGCGGGAGAGGTCAACGTGCAGxxxxxxxxxxxxxxxxxxTTAGATGTACTATCGAATGAAGTATTCATCAAGGCTCTCATAAGCAGTGGACGTACGAGCATTCTTGTTTCTGAGGAGGATGAGCAGGCAACCTTTGTTGAGCCATCACAACGAGGGAGGTACTGTGTAGTTTTTGATCCGCTTG

Fln Alignment:

biogeco3_mira_c6752___MDHAAEAHRTDLMTITRFVLNEQSKHPEARGDFTILLSHIVLGCKFVCSSVSKAGLAKLIGLAGEVNVQGxxxxKLDVLSNEVFIKALISSGRTSILVSEEDEQATFVEPSQRGRYCVVFDPL
B8LKA9__________________MDHAAEAHRTDLMTITRFVLNEQSKHPEARGDFTILLSNIVLGCKFVCSAVSKAGLAKLIGLAGEINVQGxxxxKLDVLSNEVFIKALISSGRTSILVSEENEQATFVEPSKRGRYCVVFDPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain