SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14071

Length: 539 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene14071
TCTCTACCCTTCTGCTAAAATATAAAGGTTGGATGGCAGCAGACCCGGTTTGCTCAATATTCATATCAATTATGATTATTTCATCTGCCATTCCTTTGCTTAGGAATTCAGCGGAGATATTGCTGCAAAGAGTACCTAGATTCAATGAGCATGACATAAAGCAGGCATTCAAGTTTATCCAAAACCTGAATGGGGTGCATGACCTTCAAAACATCCATGTGTGGAGCTTCACAAACAAGGAAGTTATAGCAACTCTTCATCTGCATATTTCTGCTGAAAGTGACAAGACTTCAATTGGGAACCAGGTAGCCCACTTGCTTCATGACGCTGGAGTCAAGGATTTGACGCTTCAGATGGAATCTTCGGGAGATTCTTAGAAAGCTTGCATCTGGAATCTGTGGGTTACAATCAGCCTTCTACATTAGTCCATATGTTCATCTAATCAAGATTGGAAGTATAGATATGGTTAAGCTGTATCATATTGATGGATGCCAACACACTAATATGAAAAATAACAAGCAGAATTTCATCACAACATT

Ace file of the UniGene biog3_v1.0_unigene14071 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene35778	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Cation efflux family protein [Arabidopsis thaliana] gb\|AEC05849.1\| Cation efflux family protein [Arabidopsis thaliana]	-	-	62%
FL-Next	sp=Metal tolerance protein 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	cation efflux protein zinc	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to zinc ion	GO:0010043	Biological Process	0.0	76%
Blast2go	transport	GO:0006810	Biological Process	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cation efflux protein	IPR002524	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SI03

Fln msg: your sequence is shorter than subject: 125 - 300

Fln protein: STLLLKYKGWMAADPVCSIFISIMIISSAIPLLRNSAEILLQRVPRFNEHDIKQAFKFIQNLNGVHDLQNIHVWSFTNKEVIATLHLHISAESDKTSIGNQVAHLLHDAGVKDLTLQMESSGDS*

Protein Length: 126

Fln nts: TCTCTACCCTTCTGCTAAAATATAAAGGTTGGATGGCAGCAGACCCGGTTTGCTCAATATTCATATCAATTATGATTATTTCATCTGCCATTCCTTTGCTTAGGAATTCAGCGGAGATATTGCTGCAAAGAGTACCTAGATTCAATGAGCATGACATAAAGCAGGCATTCAAGTTTATCCAAAACCTGAATGGGGTGCATGACCTTCAAAACATCCATGTGTGGAGCTTCACAAACAAGGAAGTTATAGCAACTCTTCATCTGCATATTTCTGCTGAAAGTGACAAGACTTCAATTGGGAACCAGGTAGCCCACTTGCTTCATGACGCTGGAGTCAAGGATTTGACGCTTCAGATGGAATCTTCGGGAGATTCTTAG___AAAGCTTGCATCTGGAATCTGTGGGTTACAATCAGCCTTCTACATTAGTCCATATGTTCATCTAATCAAGATTGGAAGTATAGATATGGTTAAGCTGTATCATATTGATGGATGCCAACACACTAATATGAAAAATAACAAGCAGAATTTCATCACAACATT

Fln Alignment:

biogeco3_mira_c6293___STLLLKYKGWMAADPVCXXXXXXXXXXXXIPLLRNSAEILLQRVPRFNEHDIKQAFKFIQNLNGVHDLQNIHVWSFTNKEVIATLHLHISAESDKTSIGNQVAHLLHDAGVKDLTLQMES
Q9SI03__________________STLLIKYKGWLVADPASSIFISILIIASVIPLLRNSAEILLQRVPRAHRQDLKEAMRNILKTKGVCSIQRLHVWSFTNSDVVATLHLLVSADSDKTDTKLQVSRLLEDAGVKDWTLQVES

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
368	75			25	0.996473
369		75	25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain