SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene14067

Length: 386 nt

UniGene Fasta

>biog3_v1.0_unigene14067
AATGTGCCCCTTCTCTGTTGATCTTGTTCGAGATATTTCTCGTCAGCTTCTCAAGGCCGTTGCATATATGCATGATCTCACACTTACTCACACGGACTTAAAGCCCGAGAATATTCTTCTTGTGTCATCGGATTATATAAAGATACCTGATAAGAATTCCTCAGATCCAGGAAGACATTACATGCGTGTGCCTGTGTCAAGTGCAATTAAACTAATAGATTTTGGGAGTGCCACATATGAAAGCCAACACCATTGCTCAGTTGTTTCCACCAGACATTACCGTGCACCTGAGGTGATTTTGGGTCTTGGATGGAGTTATCCTTGCGATCTGTGGAGTGTTGGCTGCATTCTAGTGGAATTGTGCTTGGTGTGTCAATATACTACAT

Ace file of the UniGene biog3_v1.0_unigene14067

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11466	2/3
SustainPine v2.0	sp_v2.0_unigene36463	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine-protein kinase AFC2 [Arabidopsis thaliana] sp\|P51567.1\|AFC2_ARATH RecName: Full=Serine/threonine-protein kinase AFC2 gb\|AAA57118.1\| protein kinase [Arabidopsis thaliana] dbj\|BAA08214.1\| protein kinase [Arabidopsis thaliana] emb\|CAA22989.1	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ferrochelatase.	EC:4.99.1.1	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Biosynthesis of secondary metabolites	01110		82%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	82%
Blast2go	heme biosynthetic process	GO:0006783	Biological Process	82%
Blast2go	mRNA processing	GO:0006397	Biological Process	82%
Blast2go	ferrochelatase activity	GO:0004325	Molecular Function	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	chloroplast	GO:0009507	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL66

Fln msg: Distance to subject end: 117 aas, your sequence is shorter than subject: 128 - 459

Fln protein: MCPFSVDLVRDISRQLLKAVAYMHDLTLTHTDLKPENILLVSSDYIKIPDKNSSDPGRHYMRVPVSSAIKLIDFGSATYESQHHCSVVSTRHYRAPEVILGLGWSYPCDLWSVGCILVELCLVCQYTT

Protein Length: 129

Fln nts: AATGTGCCCCTTCTCTGTTGATCTTGTTCGAGATATTTCTCGTCAGCTTCTCAAGGCCGTTGCATATATGCATGATCTCACACTTACTCACACGGACTTAAAGCCCGAGAATATTCTTCTTGTGTCATCGGATTATATAAAGATACCTGATAAGAATTCCTCAGATCCAGGAAGACATTACATGCGTGTGCCTGTGTCAAGTGCAATTAAACTAATAGATTTTGGGAGTGCCACATATGAAAGCCAACACCATTGCTCAGTTGTTTCCACCAGACATTACCGTGCACCTGAGGTGATTTTGGGTCTTGGATGGAGTTATCCTTGCGATCTGTGGAGTGTTGGCTGCATTCTAGTGGAATTGTGCTTGGTGTGTCAATATACTACAT

Fln Alignment:

biogeco3_mira_c6263___PFSVDLVRDISRQLLKAVAYMHDLTLTHTDLKPENILLVSSDYIKIPD-----KNSSDPGRHYMRVPVSSAIKLIDFGSATYESQHHCSVVSTRHYRAPEVILGLGWSYPCDLWSVGCILVELCL
B8LL66__________________PFPIDIVRELGKQLLESVAYMHHLHLIHTDLKPENILFASSEYKKVPYYKNGLKRLSQDGTCYMRLPKSTAIKLIDFGSATFEDQNHSSIISTRHYRAPEVILGLGWSYPADVWSIGCILVELCV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
131	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain