SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13771

Length: 420 nt

UniGene Fasta

>biog3_v1.0_unigene13771
TAAAGCTCTGAACATCAGAATAAAGAGATTTTTTCCTGATGGCGCTTGCCATGGATGAAGGCCATAGCCATCCAGAGTTTCGCAAAATTCCTGTCATAGATTTACGGTTTCTGTCTCAAGATGAGATCAATTGCGCAGCCCAGTGGTCAGACGAAGACACGGAACTACAGCTCAAGGATATTGTAATACCTAAGATAGACCGCTCTATATTTAATGAAAGTGCCGGTAGTCGCAAGCAAACATATTCGAGACTGCGGTTTTCTCAGAGAAAGGAGTTATTTGGCAGGAAATGTGACTCTTTAGGTAGCCACTGCAGTCTCTTTTTTCTTACAGAATTCCCGTATTATTGGCAAGTGATTTAACATGTTCCTAAAAGAATGTGTTTTCAGATTTTCCCCTAGGCCAATAAGGCAAGACATT

Ace file of the UniGene biog3_v1.0_unigene13771

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3236	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	methyl-CPG-binding domain 8 [Arabidopsis thaliana] sp\|Q9LME6.1\|MBD8_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 8; Short=AtMBD8; Short=MBD08; AltName: Full=Methyl-CpG-binding protein MBD8 gb\|AAF87260.1\|AC068562_7 Contains a Methyl-CpG	-	-	2.0e-06	38%
FL-Next	sp=Methyl-CpG-binding domain-containing protein 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	38%
Blast2go	methyl binding domain protein	-	-	3.04398e-14	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9LME6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 380 aas, your sequence is shorter than subject: 108 - 524

Fln protein: MALAMDEGHSHPEFRKIPVIDLRFLSQDEINCAAQWSDEDTELQLKDIVIPKIDRSIFNESAGSRKQTYSRLRFSQRKELFGRKCDSLGSHCSLFFLTEFPYYWQVI*

Protein Length: 109

Fln nts: TAAAGCTCTGAACATCAGAATAAAGAGATTTTTTCCTG_-_ATGGCGCTTGCCATGGATGAAGGCCATAGCCATCCAGAGTTTCGCAAAATTCCTGTCATAGATTTACGGTTTCTGTCTCAAGATGAGATCAATTGCGCAGCCCAGTGGTCAGACGAAGACACGGAACTACAGCTCAAGGATATTGTAATACCTAAGATAGACCGCTCTATATTTAATGAAAGTGCCGGTAGTCGCAAGCAAACATATTCGAGACTGCGGTTTTCTCAGAGAAAGGAGTTATTTGGCAGGAAATGTGACTCTTTAGGTAGCCACTGCAGTCTCTTTTTTCTTACAGAATTCCCGTATTATTGGCAAGTGATTTAACATGTTCCTAAAAGAATGTGTTTTCAGATTTTCCCCTAGGCCAATAAGGCAAGACATT

Fln Alignment:

biogeco3_mira_c4983___DEGHSHPEF----------RKIPVIDLRFLSQDEINCAAQWSDEDTELQLK--------DIVIPKIDRSIFNESAGSRKQTYSRLRFSQRKE
Q9LME6__________________DLGNNHHNFLGGAGNRLSAESLPLIDTRLLSQSELRALSQCSSLSPSSSASLAASAGGDDDLTPKIDRSVFNESAGSRKQTFLRLRLARHPQ

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
108	20		80		0.995493
171	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain