SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13770

Length: 475 nt

UniGene Fasta

>biog3_v1.0_unigene13770
AATGTAATTGGATGGCTGAAATGATTGCACAACATTCGTCAGACAAAAACCCGATTAGCCCAGATCCTTCACCACTCCAGAGTCCAAGGATAAAAAGTCCTGTTCAGAGATCAAGAATTCACACTGGAGCAATGTCTCCTCTGCAATCAAGGCTGGCTTCAGACTTCTCAACAGGATGGCATGATGATGTTAACAATGTACACCCATTGCCACTTCCTCCCAGCAATACTAGTCCTGTTGGTCCTCCTTTATCGCCATCTTCTCCATCAGCAGCTGTCCAGCGTAGCAGTGGAAGAATTGAGACATCAGTCACCCCAGGCCGATGGCAAAAAGGAAAGCTTCTTGGTAGTGGCACATTTGGCACTGTCTATGTTGGTTTTAACAGAGAAACTGGGGATATGTGCGCCATGAAAGAGGTCCCCCTGGTTCCTGATGATTCCAGATCTTCTGAGAGTATCAAGCAACTGGAAACATT

Ace file of the UniGene biog3_v1.0_unigene13770

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10571	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	1.0e-33	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	protein	-	-	0.0	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	72%
Blast2go	ATP binding	GO:0005524	Molecular Function	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%

Source	InterPros	Term	Type	Identity
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Distance to subject end: 422 aas, your sequence is shorter than subject: 157 - 902

Fln protein: CNWMAEMIAQHSSDKNPISPDPSPLQSPRIKSPVQRSRIHTGAMSPLQSRLASDFSTGWHDDVNNVHPLPLPPSNTSPVGPPLSPSSPSAAVQRSSGRIETSVTPGRWQKGKLLGSGTFGTVYVGFNRETGDMCAMKEVPLVPDDSRSSESIKQLET

Protein Length: 158

Fln nts: AATGTAATTGGATGGCTGAAATGATTGCACAACATTCGTCAGACAAAAACCCGATTAGCCCAGATCCTTCACCACTCCAGAGTCCAAGGATAAAAAGTCCTGTTCAGAGATCAAGAATTCACACTGGAGCAATGTCTCCTCTGCAATCAAGGCTGGCTTCAGACTTCTCAACAGGATGGCATGATGATGTTAACAATGTACACCCATTGCCACTTCCTCCCAGCAATACTAGTCCTGTTGGTCCTCCTTTATCGCCATCTTCTCCATCAGCAGCTGTCCAGCGTAGCAGTGGAAGAATTGAGACATCAGTCACCCCAGGCCGATGGCAAAAAGGAAAGCTTCTTGGTAGTGGCACATTTGGCACTGTCTATGTTGGTTTTAACAGAGAAACTGGGGATATGTGCGCCATGAAAGAGGTCCCCCTGGTTCCTGATGATTCCAGATCTTCTGAGAGTATCAAGCAACTGGAAACATT

Fln Alignment:

biogeco3_mira_c4981___NWMAEMIAQHSSDKNPISPDPSPLQSPRIKSPVQRSRIHTGAMSPLQSRLASDFSTGWHDD-VN-NVHPLPLPPSNTXXXXXXXXXXXXXAAV-QRSSGRIETSVTPGRWQKGKLLGSGTFGTVYVGFNRETGDMCAMKEVPLVPDDSRSSESIKQLE
B8LR19__________________NWMAEMIAQHSSDKSIISPDPSPLQSPKIRSSGQRSRIHTGAVSPLHSRLASDF-TGWRDDGININVHPLPLPPGSTSPFGPPPLSPSSPSAVVQRSSGRIETSVAPGRWQKGKLLGCGTFGTVYVGFNRETGDMCAMKEVPLVPDDSKSSESIKQLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain