SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13738

Length: 550 nt

UniGene Fasta

>biog3_v1.0_unigene13738
AATGTCAGTGATGATGGTGTGGTTTTAGTCTGGCGGCTGCGGAAGGATGGTGTTCGTGGTCAGACGACCGTTTAACATTTGCAAAGGTCTTTGTGTGCACACACTGGAAAAGTGTATGCATAGCTGTTTGCCAACCTTACAGTTTGATTGTTACTGGATCTGAAGACTGTAGTGTTATTTTCTGGGACCTCATCAGCCTTGAATTTGTGAGGCAGCTTCCAAAATTTCCAGCACCAGCTTCAGCTGTATATGCAAATGAAATGACTGGTGAGGTGGTAACAGCAGCTGGTACTATGCTTTCTGTATGGAGTATAAACGGTGATTGTTTAGCTGTTGTAAATACTTCACAATTGCTTCAGATTTTGCCATCTCAGTAACAAGCTCAAGCTTTTCAGACTGGATGGAGACAAATTGGTATATAACTGGTCATCAGAGTGGTGCTGTTAAGGTCTGGCACATGGTACATGTGACTGAGGAAGGTGTTTATAGAGAAAATCAAAGTGCAGGTTCAACTTCTATCAACAGCGATACATCTGCTAGAAGCAACATT

Ace file of the UniGene biog3_v1.0_unigene13738

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3680	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	5.0e-19	24%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	58%
Blast2go	beach domain-containing protein lvsa-like	-	-	0.0	75%

Source	GOs	Term	Type	Identity
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	75%
Blast2go	signal transduction	GO:0007165	Biological Process	75%
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	75%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	75%
Blast2go	vacuole organization	GO:0007033	Biological Process	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	6-phosphogluconate dehydrogenase, C-terminal	IPR006114	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3		IPR006183	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7M3F4

Fln msg: Overlapping hits, possible frame ERROR between 114 and 93, and possible frame ERROR between 344 and 350, STOP codon was not found. Distance to subject end: 22 aas, your sequence is shorter than subject: 184 - 3438

Fln protein: NVSDDGVVLVWRLRKDGVRGQTTV*HLQRSxxxxxxxxxCIAVCQPYSLIVTGSEDCSVIFWDLISLEFVRQLPKFPAPASAVYANEMTGEVVTAAGTMLSVWSINGDCLAVVNxxxIASDFAISVTSSSFSDWMETNWYITGHQSGAVKVWHMVHVTEEGVYRENQSAGSTSINSDTSARSNI

Protein Length: 185

Fln nts: AATGTCAGTGATGATGGTGTGGTTTTAGTCTGGCGGCTGCGGAAGGATGGTGTTCGTGGTCAGACGACCGTTTAACATTTGCAAAGGTCTxxxxxxxxxxxxxxxxxxxxxxxxxxxTGCATAGCTGTTTGCCAACCTTACAGTTTGATTGTTACTGGATCTGAAGACTGTAGTGTTATTTTCTGGGACCTCATCAGCCTTGAATTTGTGAGGCAGCTTCCAAAATTTCCAGCACCAGCTTCAGCTGTATATGCAAATGAAATGACTGGTGAGGTGGTAACAGCAGCTGGTACTATGCTTTCTGTATGGAGTATAAACGGTGATTGTTTAGCTGTTGTAAATAxxxxxxCAATTGCTTCAGATTTTGCCATCTCAGTAACAAGCTCAAGCTTTTCAGACTGGATGGAGACAAATTGGTATATAACTGGTCATCAGAGTGGTGCTGTTAAGGTCTGGCACATGGTACATGTGACTGAGGAAGGTGTTTATAGAGAAAATCAAAGTGCAGGTTCAACTTCTATCAACAGCGATACATCTGCTAGAAGCAACATT

Fln Alignment:

biogeco3_mira_c4830___SDDGVVLVWRLRKDGVRGQTTV*HLQRSxxxxxxxx-CIAVCQPYSLIVTGSEDCSVIFWDLISLEFVRQLPKFPAPASAVYANEMTGEVVTAAGTMLSVWSINGDCLAVVNTxxIASDFAISVTSSSFSDWMETNWYITGHQSGAVKVWHMVHVTEE
D7M3F4__________________ADDGLVSVWRVSKDGPRGSRRL-QLEKSxxxxxxxxTCLRVSQPYMMIASSSDDCTVIIWDLSSLNFVRQLPNFPVPVSAVYINDLTGEIVTAAGSVLAVWSINGDCLAVVNTxxLLSDLIVSVAGSTFSDWLETTWYVTGHQSGAVKVWRMVHLTEQ

SNPs (tot: 3)

Position	A %	G %	T %	Probability
126	33		66	0.997458
127	33	66		0.997458
129		33	66	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain