SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13713

Length: 423 nt

UniGene Fasta

>biog3_v1.0_unigene13713
ACTTTCTTGGTGAGCAGAAAGAAGATGTACATCATTCTGTCATTTCTGATTTGCACAATGGGAATCCAGAGACAAGGAGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACCGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTTGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATT

Ace file of the UniGene biog3_v1.0_unigene13713

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene416	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase delta catalytic subunit n=6 Tax=Poaceae RepID=DPOD1_ORYSJ	-	-	83%
FL-Next	sp=DNA polymerase delta catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	90%
Blast2go	dna polymerase delta subunit 1	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	89%
Blast2go	Pyrimidine metabolism	00240	89%
Blast2go	Metabolic pathways	01100	89%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	89%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	89%
Blast2go	exonuclease activity	GO:0004527	Molecular Function	89%
Blast2go	metal ion binding	GO:0046872	Molecular Function	89%
Blast2go	DNA binding	GO:0003677	Molecular Function	89%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3		IPR017966	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3	DNA-directed DNA polymerase, family B, exonuclease domain	IPR006133	-	-
Sma3	DNA-directed DNA polymerase, family B, pol2	IPR004578	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRE6

Fln msg: Distance to subject end: 481 aas, your sequence is shorter than subject: 140 - 1105

Fln protein: FLGEQKEDVHHSVISDLHNGNPETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPLSFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCY

Protein Length: 141

Fln nts: ACTTTCTTGGTGAGCAGAAAGAAGATGTACATCATTCTGTCATTTCTGATTTGCACAATGGGAATCCAGAGACAAGGAGAAGGCTTGCTGTATATTGTCTGAAGGATGCTTATCTTCCACAGCGGCTCTTGGATAAACTGATGTTTATATACAATTATGTAGAGATGGCTCGTGTTACCGGTGTTCCTTTGTCATTTTTGCTTTCCAGGGGTCAAAGCATCAAGGTTTTATCTCAGATACTAAGAAAATCAAGGCAAAAGAATCTTCTTGTGCCAAATATTAAAGGCCAAGGCTCTGGACAGGAGACTTTTGAAGGTGCAACGGTTTTGGAGGCAAAATCAGGTTTCTATGAAAAACCAATTGCAACTCTTGACTTTGCGTCCTTGTATCCTTCAATCATGATGGCATATAATCTTTGTTATT

Fln Alignment:

biogeco3_mira_c4746___FLGEQKEDVHHSVISDLHNGNPETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPLSFLLSRGQSIKVLSQILRKSRQKNLLVPNIKGQGSGQETFEGATVLEAKSGFYEKPIATLDFASLYPSIMMAYNLCY
Q9LRE6__________________FLGEQKEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNIKGQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
224			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain