SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13610

Length: 275 nt

UniGene Fasta

>biog3_v1.0_unigene13610
AATGTACTAAAAATCAATGATCAGAGCAGCAAGGTTAGGGTTTCTTTGATCGAATCCCAGCAAAAACCAGAAAATTCAGTACCCAACCTAACTATTTCTCCCATGGAGTTATCACTGAAGTCGGAGATCTGTTTAAATTGCACAGAGCAATCGCGAGAGAATTATCCAACGACCATTAAAGAACAGGAAGGTGGGTGTTGCAGCTATGTGACTGAAGCTGCAAGTTCTATTTATAACATCGACAGCCCGCGCACGATTGAAAGTCCCCAGGGGGT

Ace file of the UniGene biog3_v1.0_unigene13610

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene256	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper-like protein n=2 Tax=Picea RepID=Q3HRT1_PICGL	-	-	3.9937e-43	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	transcription factor	-	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	66%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	66%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	66%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	66%
Blast2go	nucleus	GO:0005634	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain	IPR001356	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3		IPR012287	-	-
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQH8

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 91 - 300

Fln protein: NVLKINDQSSKVRVSLIESQQKPENSVPNLTISPMELSLKSEICLNCTEQSRENYPTTIKEQEGGCCSYVTEAASSIYNIDSPRTIESPQG

Protein Length: 92

Fln nts: AATGTACTAAAAATCAATGATCAGAGCAGCAAGGTTAGGGTTTCTTTGATCGAATCCCAGCAAAAACCAGAAAATTCAGTACCCAACCTAACTATTTCTCCCATGGAGTTATCACTGAAGTCGGAGATCTGTTTAAATTGCACAGAGCAATCGCGAGAGAATTATCCAACGACCATTAAAGAACAGGAAGGTGGGTGTTGCAGCTATGTGACTGAAGCTGCAAGTTCTATTTATAACATCGACAGCCCGCGCACGATTGAAAGTCCCCAGGGGGT

Fln Alignment:

biogeco3_mira_c4354___LKINDQSSKVRVSLIESQQKPENSVPNLTISPMELSLKSEICLNCTEQSRENYPTTIKEQEGGCCSYVTEAASSIYNIDSPRTIESPQ
A9NQH8__________________LKDNDRSSKVSISEIESQKKPANSVPKITDSPMELSVKSEICINFTEQPKHNYPTTTNEQDGGCCSYMTESASSIFNMDSPRTIESPQ

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
247	25		75		0.996473
249	25	75			0.996473
250		75		25	0.996473
251			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain