SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13592

Length: 384 nt

UniGene Fasta

>biog3_v1.0_unigene13592
AATGTCAGATACTTTCCAGAACCTGATCTTCCGGACGTTATCTTAACACAGGATTATATTGATGCTGTTAAAGCTAGTCTTCCAGAGCTCCCAGATGAAAAGCGTCGACGTTATGAGAGAATGGGGCTTAGCATGCAAGATGTCATCATACTAGCAAATGACAGTGATGTGTCAGCTTTTTTCGATGCAGTTCTGGTAAAGGGGGCTGATGCGAAGATGGCCGCTAATTGGATAATGGGTGATATAGCAGCATATCTTAAGAGTGAGAAGCTGTCAATATCTGAGATCAAATTAACACCTTTTGAATTGGCAGACCTTATAGCTTTTATTAAAGATGGAACCATCAGTGGAAAAATTGGCAAAGAGGTACTAGTAGAACTTCTT

Ace file of the UniGene biog3_v1.0_unigene13592

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8051	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative n=1 Tax=Ricinus communis RepID=B9SQR9_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	aspartyl-trna glutamyl-trna amidotransferase subunit b	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutaminyl-tRNA synthase (glutamine-hydrolyzing).	EC:6.3.5.7	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	87%
Blast2go	Metabolic pathways	01100		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	glutamyl-tRNA aminoacylation	GO:0006424	Biological Process	87%
Blast2go	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	GO:0050567	Molecular Function	87%
Blast2go	transferase activity	GO:0016740	Molecular Function	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E	IPR017959	-	-
Sma3	Asn/Gln amidotransferase	IPR018027	-	-
Sma3	Glutamyl-tRNA(Gln) amidotransferase, B subunit	IPR004413	-	-
Sma3		IPR006107	-	-
Sma3	Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic	IPR006075	-	-
Sma3	Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site	IPR017958	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9X5

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 128 - 511

Fln protein: NVRYFPEPDLPDVILTQDYIDAVKASLPELPDEKRRRYERMGLSMQDVIILANDSDVSAFFDAVLVKGADAKMAANWIMGDIAAYLKSEKLSISEIKLTPFELADLIAFIKDGTISGKIGKEVLVELL

Protein Length: 129

Fln nts: AATGTCAGATACTTTCCAGAACCTGATCTTCCGGACGTTATCTTAACACAGGATTATATTGATGCTGTTAAAGCTAGTCTTCCAGAGCTCCCAGATGAAAAGCGTCGACGTTATGAGAGAATGGGGCTTAGCATGCAAGATGTCATCATACTAGCAAATGACAGTGATGTGTCAGCTTTTTTCGATGCAGTTCTGGTAAAGGGGGCTGATGCGAAGATGGCCGCTAATTGGATAATGGGTGATATAGCAGCATATCTTAAGAGTGAGAAGCTGTCAATATCTGAGATCAAATTAACACCTTTTGAATTGGCAGACCTTATAGCTTTTATTAAAGATGGAACCATCAGTGGAAAAATTGGCAAAGAGGTACTAGTAGAACTTCTT

Fln Alignment:

biogeco3_mira_c4270___RYFPEPDLPDVILTQDYIDAVKASLPELPDEKRRRYERMGLSMQDVIILANDSDVSAFFDAVLVKGADAKMAANWIMGDIAAYLKSEKLSISEIKLTPFELADLIAFIKDGTISGKIGKEVLVELL
D5A9X5__________________RYFPEPDLPEVILTQDYIDALKASLPELPDEKRRRYERMGLSMQDVIILANDSDVATFFDAVLEKGADVKMAANWIMGDIAAFLKSEKLSISEIKLTPLELADLIALIKDGTISGKIGKEVLVELL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
181	33			66	0.997456
182	33			66	0.997459
183		66		33	0.997452
185	66			33	0.997452
285		33	66		0.997467
288		66		33	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain