SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene13125

Length: 1237 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene13125 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3041	10/26
SustainPine v2.0	sp_v2.0_unigene22299	7/26
SustainPine v2.0	sp_v2.0_unigene23628	9/26

Source	Descriptions	Term	Type	Identity
AutoFact	ferredoxin-dependent glutamate synthase [Glycine max]	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ferredoxin-dependent glutamate synthase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutamate synthase (ferredoxin).	EC:1.4.7.1	-	0.0	92%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	92%
Blast2go	response to light stimulus	GO:0009416	Biological Process	92%
Blast2go	glutamine metabolic process	GO:0006541	Biological Process	92%
Blast2go	glutamate biosynthetic process	GO:0006537	Biological Process	92%
Blast2go	photorespiration	GO:0009853	Biological Process	92%
Blast2go	positive regulation of glycine hydroxymethyltransferase activity	GO:0080114	Biological Process	92%
Blast2go	glutamate synthase (ferredoxin) activity	GO:0016041	Molecular Function	92%
Blast2go	metal ion binding	GO:0046872	Molecular Function	92%
Blast2go	3 iron, 4 sulfur cluster binding	GO:0051538	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	92%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	92%
Blast2go	membrane	GO:0016020	Cellular Component	92%
Blast2go	apoplast	GO:0048046	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3		IPR000759	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-
Sma3	Glutamate synthase, alpha subunit, C-terminal	IPR002489	-	-
Sma3	Glutamate synthase, central-C	IPR002932	-	-
Sma3	Glutamate synthase, NADH/NADPH, small subunit 1	IPR006005	-	-
Sma3	Glutamate synthase, central-N	IPR006982	-	-
Sma3	Glutamate synthase, eukaryotic	IPR012220	-	-
Sma3	Fumarate reductase, C-terminal	IPR012285	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Rhodopsin, retinal binding site	IPR018229	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NK83

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 88 aas, putative chimeric sequence, your sequence is shorter than subject: 158 - 245

Fln protein: MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRECRSVGDQDCTRSKAGRRRATAWKESQHLHSKIA*

Protein Length: 159

Fln nts: CGGGACTCTGAAATTTCGATCCCCGGATCAAGTGCGATAACGTCTATTGGCTTGGGTGCCGAAGGCTACACTACTCTGAAATTTCGAACCCCGGATCAGGCCGAATTTGCCAGGACGAACATCACTTTAAGCTTGCAGCAATACGCACTGCTATCTACTTACGGCTGTAAGCTCAAAGGAGTAAATCATCTCTTTGGCTGTGCATC_-_ATGGCTACCAGAACTCAGTTTGAAAATTCCAGTGAGATTGGTGTTTTTTCAAAACTTACTAATGGATATTGCCTGGTGGCCATTGGAGGATCAGAGAACTTTTACAGCACATTTGAGGCAGAGCTGGCAGATGTTATTCCTGTTGTGAAGACATCTATAGGAGGCACCAGGATTGTTGGCCGTCTTTGTGCTGGGAACAAAAATGGTCTTTTGCTGCCAAATACAACTACCGACCAAGAGCTTCAACACTTGAGGAATAGTTTGCCTGATGAAGTTGTGGTGCAACGTGTTGAAGAACGACTATCTGCGCTTGGCAATTGTGTGGTGTGCAATGATCATGTTGCTCTCATTCATACCGACCTGGACAGGGAATGCAGATCAGTTGGAGATCAAGATTGCACAAGGAGCAAAGCCGGGCGAAGGAGGGCAACTGCCTGGAAAGAAAGTCAGCACTTACATAGCAAGATTGCGTAA___CTCTAAACCTGGTGTACCTCTGATATCACCTCCTCCACATCATGATATCTACTCTATCGAGGACCTTGCGCAATTGATTTTTGACCTTCACCAGGTCAATCCAACGGCAAAGGTTTCTGTCAAGCTTGTAGCAGAGGCTGGAATTGGAACTGTTGCCTCTGGAGTTGCAAAAGGCAATGCTGATATAATACAGATATCAGGACATGATGGGGGCACTGGAGCAAGTCCAATAAGTTCTATCAAACACGCAGGTGGTCCTTGGGAGCTTGGTCTTACAGAGACACATCAGACACTTATTGAGAATGGGCTGCGCGAAAGGGTTGTTCTAAGGGTTGATGGTGGTTTCAAGAGTGGAGTTGATGTCATGTTGGCAGCAGCAATGGGTGCAGATGAGTATGGATTTGGTTCAGTAGCCATGATAGCTACCGGTTGTATTATGGCTAGGATCTGCCACACGAACAATTGTCCTGTTGGTGTTGCTAGCCAGAGAGAGGAATTGCGGGCACGGTTTCCTGGTGTACCTGGAGACTTGGTCAACAGATTTGCTAAGACACATT

Fln Alignment:

biogeco3_mira_c1067___MATRTQFENSSEIGVFSKLTNGYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIVGRLCAGNKNGLLLPNTTTDQELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRE
A9NK83__________________MATRTQFENSSEVGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIAGTRIIGRLCAGNKNGLLLPNTTTDEELQHLRNSLPDEVVVQRVEERLSALGNCVVCNDHVALIHTDLDRE

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
381	20	80			0.995493
399	25	75			0.996473
402			75	25	0.996473
403	75			25	0.996473
454	20	80			0.995493
456	20		80		0.995493
554	25			75	0.996473
555	25			75	0.996473
557	75		25		0.996473
558			75	25	0.996473
681	33			66	0.997452
722	20	80			0.995493
725	80			20	0.995493
726			80	20	0.995493
840			20	80	0.995493
967	40		60		1.0
970	60			40	1.0
1069	14			71	0.984337
1070	14			85	0.993533
1071			14	85	0.993533
1072		14	85		0.993533
1074	85	14			0.993533
1078			14	85	0.993533
1079	14			85	0.993533
1083	14		85		0.993533
1084	14	85			0.993533
1085	14	85			0.993533
1091	14		85		0.993533
1093	85			14	0.993533
1102			83	16	0.994512
1157	25	75			0.996473
1159	25		75		0.996473
1160			75	25	0.996473
1161			75	25	0.996473
1187	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain