SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12341

Length: 727 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12341 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23520	42/42

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S19-1 [Arabidopsis thaliana] sp\|Q9SGA6.1\|RS191_ARATH RecName: Full=40S ribosomal protein S19-1 gb\|AAF14828.1\|AC011664_10 putative 40S ribosomal protein S19 [Arabidopsis thaliana] gb\|AAK44092.1\|AF370277_1 putative 40S ribosomal protei	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	40s ribosomal protein s19	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	vacuole	GO:0005773	Cellular Component	93%
Blast2go	cell wall	GO:0005618	Cellular Component	93%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S19e	IPR001266	-	0.0	-
Sma3	Ribosomal protein S19e, conserved site	IPR018277	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
40	40	60			1.0
62	83			16	0.994512
110	14		85		0.993533
111			85	14	0.993533
114		85		14	0.993533
154	11		88		0.923564
156			88	11	0.923564
157	88		11		0.923564
211	88	11			0.923564
213	88			11	0.923564
214	88			11	0.923564
284	12	87			0.992554
287			87	12	0.992554
349		40	60		1.0
439	87			12	0.992554
441		87		12	0.992554
629		10	90		0.90298
630	10		90		0.90298
632			90	10	0.90298
643	37		62		1.0
647	12		87		0.992554
649	87			12	0.992554
654	14	85			0.993533
656	14		85		0.993533
658		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain