SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12311

Length: 627 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12311 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15427	5/21
SustainPine v2.0	sp_v2.0_unigene29574	2/21
SustainPine v2.0	sp_v2.0_unigene60270	5/21
SustainPine v2.0	sp_v2.0_unigene60285	9/21

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S20-1 n=12 Tax=rosids RepID=RS201_ARATH	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	40s ribosomal protein s20	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	cell wall	GO:0005618	Cellular Component	93%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	93%
Blast2go	membrane	GO:0016020	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S10	IPR001848	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	Ribosomal protein S10, eukaryotic/archaeal	IPR005729	-	-

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
53	16	83			0.994512
55		83		16	0.994512
56		83	16		0.994512
57	83			16	0.994512
94	50		50		1.0
112	33		50		1.0
130	50		50		1.0
140	12			87	0.992554
158		50	25		1.0
159			25	62	1.0
191		50		50	1.0
227			88	11	0.923564
248			11	88	0.923564
262		88		11	0.923564
266			88	11	0.923564
272		20		80	0.995493
278		20	80		0.995493
284		20		80	0.995493
320	50		50		1.0
341	20		20		0.99255
342	60		20	20	0.99255
348	40		60		1.0
372	75	25			0.996473
381	50		50		1.0
396	33		66		0.997452
399		66		33	0.997452
402		33	66		0.997452
420	33	66			0.997452
429		66		33	0.997452
473	16			83	0.999991
504		33		66	1.0
508		33	66		1.0
522	66	33			1.0
541	63		36		1.0
597	33		66		0.997452
598		33	66		0.997452
599	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain