SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12306

Length: 277 nt

UniGene Fasta

>biog3_v1.0_unigene12306
AATGTTCCCTTACCTCAATACTTATGATGGACGCACAATTAGGTACCCAGACCCATTGATCAAGGCCAATGATACAATTAAGCTTGACCTAGAGACGGGCAAGATCATGGAGTTCATAAAGTTTGATGTTGGTAATGTTATAATGGTTACTGGAGGCCGCAATAGAGGTCGTGTTGGAGTCATTAAGCACAGAGAAAAGCACAAGGGTAGCTTTGAGATTATTCACGTGCAAGATGCCGCTGGGCAGGAATTCGCGACCCGTCAGGGTAATGTGTTC

Ace file of the UniGene biog3_v1.0_unigene12306

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23864	1/2
SustainPine v2.0	sp_v2.0_unigene60565	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal S4 protein [Glycine max] gb\|ACU21252.1\| unknown [Glycine max]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	40s ribosomal protein s4	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein S4e	IPR000876	-	-
Sma3	Ribosomal protein S4e, central	IPR013845	-	-
Sma3	Ribosomal protein S4e, N-terminal	IPR013843	-	-
Sma3	Ribosomal protein S4e, N-terminal, conserved site	IPR018199	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNW1

Fln msg: Distance to subject end: 37 aas, your sequence is shorter than subject: 92 - 263

Fln protein: MFPYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVF

Protein Length: 93

Fln nts: AATGTTCCCTTACCTCAATACTTATGATGGACGCACAATTAGGTACCCAGACCCATTGATCAAGGCCAATGATACAATTAAGCTTGACCTAGAGACGGGCAAGATCATGGAGTTCATAAAGTTTGATGTTGGTAATGTTATAATGGTTACTGGAGGCCGCAATAGAGGTCGTGTTGGAGTCATTAAGCACAGAGAAAAGCACAAGGGTAGCTTTGAGATTATTCACGTGCAAGATGCCGCTGGGCAGGAATTCGCGACCCGTCAGGGTAATGTGTTC

Fln Alignment:

Contig12306___PYLNTYDGRTIRYPDPLIKANDTIKLDLETGKIMEFIKFDVGNVIMXXXXXXXXXXXXIKHREKHKGSFEIIHVQDAAGQEFATRQGNVF
A9NNW1__________________PYLNTYDGRTIRYPDPLVKANDTIKVDLETGKIKEFIKFDVGNVIMVTGGRNRGRVGVIKHREKHKGSFEIIHVQDAAGQEFATRQGNVF

SNPs (tot: 3)

Position	A %	C %	T %	Probability
83	33	66		0.997452
84	33		66	0.997452
88	33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain