SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12297

Length: 1181 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12297 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7762	52/76
SustainPine v2.0	sp_v2.0_unigene23885	13/76
SustainPine v2.0	sp_v2.0_unigene24044	2/76
SustainPine v2.0	sp_v2.0_unigene24084	9/76

Source	Descriptions	Term	Type	Identity
AutoFact	Flavanone 3-hydroxylase n=1 Tax=Ginkgo biloba RepID=Q5XPX2_GINBI	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	flavanone 3-hydroxylase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	0.0	85%

Source	KEGGs	Term	Type	Identity
Blast2go	Flavonoid biosynthesis	00941		85%
Blast2go	Biosynthesis of phenylpropanoids	01061		85%
Blast2go	Metabolic pathways	01100		85%
Blast2go	Biosynthesis of secondary metabolites	01110		85%
Blast2go	Oxidoreductases, Acting on single donors with incorporation of molecular oxygen, With incorporation of two atoms of oxygen.	EC:1.13.11.-	-	85%

Source	KEGGs	Term	Identity
Blast2go	Benzoate degradation	00362	85%
Blast2go	Tryptophan metabolism	00380	85%
Blast2go	Arachidonic acid metabolism	00590	85%
Blast2go	Xylene degradation	00622	85%
Blast2go	Toluene degradation	00623	85%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	85%
Blast2go	Naphthalene degradation	00626	85%
Blast2go	Aminobenzoate degradation	00627	85%
Blast2go	Nitrotoluene degradation	00633	85%
Blast2go	Betalain biosynthesis	00965	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	flavonoid biosynthetic process	GO:0009813	Biological Process	85%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	85%
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	L-ascorbic acid binding	GO:0031418	Molecular Function	85%
Blast2go	naringenin 3-dioxygenase activity	GO:0045486	Molecular Function	85%
Blast2go	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	GO:0016702	Molecular Function	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZT8

Fln msg: your sequence is shorter than subject: 268 - 371

Fln protein: CFFALPAEEKLFKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYSRKMSRDIELARQKKMAKLQAQEPEGEKA*

Protein Length: 269

Fln nts: AATGTTTCTTCGCCCTCCCTGCAGAGGAGAAGCTTTTCAAATACGACATGAGAGGTGGAAAGCGTGGAGGATTTGTGGTAAGCAGCCATCTGCAGGGCGAAGCCGTTCTGGACTGGAGAGAAATCTGCACTTACTTCTCTTATCCCCTTCACCAGCGTGATTACACAAGGTGGCCTGTCAAGCCCGATGGTTGGAGGGAGGTTGTGGAGAAATACAGCGAATCCCTTATGGGTTTGGCATGCAAGCTGTTGGGGATAATATCAGAGGCATTGGGATTGGAAACTGAAGCAGTGACCAACGCTTGTGTGGAGATGGACCAGAAAGTGGTGATAAACTTCTATCCCAAATGCCCACAACCAGACATGACATTGGGGCTGAAAAGGCACACCGATCCGGGCACCATCACTCTTCTCCTGCAAGACCAAGTTGGAGGGCTACAAGCTACTAAGGACGATGGCAAAAACTGGATTACTGTGGAGCCCATTCAAGGAGCCTTTGTTGTCAATTTGGGTGATCATATGCATTATCTGAGCAATGGCAAGTTCAAGACCGCGGACCATCAAGCGGTGGTGAACTCGAACAGCAGCAGGCTGTCGATTGCGACGTTTCAGAATCCAGCGCAGGAGGCCATCGTGTACCCGTTGGATGGAGTCGTGAAGGAGGCGGAAGGCGAGAAGTGCTTCATGGAAGAGCCCATCACTTTTGCTCAGATGTACTCCAGAAAGATGAGCCGAGACATCGAGCTCGCTCGCCAGAAGAAGATGGCTAAACTTCAAGCGCAGGAGCCGGAAGGAGAAAAAGCCTAA___ATAAAATCATACAGTCTGAATTCGGCCTTCCACAAAATCTAAAACAACATTTCGTGCAGTAAATACTTCCGTATTCTGTTATTGTGGTTCTCTTTAGTTGCATTGTAGGTTTTGATGAGCCCTTGGTCAGATATTGGCAAAGGGTGAGTTAAATAATGAATCCGAATAGCGTGAACGAAAATGAAGCAGCTCTGGTTTGCATGCTTCTTAATATTGTTTCAGGCCATTTAAGGGATCCAGTTCCATGGAGTTAAAATAGTAGTTATGGCAATACACAGTCCATAGTCAAAGAGTTAGTGGCTTCTAAACTTGCGGCCTATTGAGTATTAAAATGATTTAATGTTTGATTATTACACGATGCTGTCTGCATATTTA

Fln Alignment:

Contig12297___FFALPAEEKLFKYDMRGGKRGGFVVSSHLQGEAVLDWREICTYFSYPLHQRDYTRWPVKPDGWREVVEKYSESLMGLACKLLGIISEALGLETEAVTNACVEMDQKVVINFYPKCPQPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKTADHQAVVNSNSSRLSIATFQNPAQEAIVYPLDGVVKEAEGEKCFMEEPITFAQMYSRKMSRDIELARQKKMAKLQAQEPE
A9NZT8__________________FFALPAEEKL-KYDMRGGKRGGFVVSSHLQGESVLDWREICTYFSYPLHQRDYSRWPVKPDGWREIVEKYSEALMGLACNMLAIVSEALGLESDAVTKACVEMDQKVVVNFYPKCPEPDMTLGLKRHTDPGTITLLLQDQVGGLQATKDDGKNWITVEPIQGAFVVNLGDHMHYLSNGKFKSADHQAVVNSNSSRLSIATFQNPAQEGIVYPLDGVVKESEGEKCFMEEPITFAQMYSRKMSRDIELARQKKMAKVQAQEPE

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
230	20	80			0.995493
232		80		20	0.995493
233		80	20		0.995493
266	83			16	0.994512
267		83	16		0.994512
268		83		16	0.994512
280	83			16	0.994512
291	16		83		0.994512
306		83	16		0.994512
323	16		83		0.994512
324	83			16	0.994512
325	83			16	0.994512
341	25			75	0.996473
342		25		75	0.996473
343	25		75		0.996473
345			75	25	0.996473
349			66	33	0.997452
350			66	33	0.997452
452		72		27	1.0
630		89		10	0.999919
693	15	84			0.999986
715		88		11	0.923564
739	50	50			1.0
747	16		83		0.994512
749	20	80			0.995493
750		80		20	0.995493
838	14		85		0.993533
839	14		85		0.993533
840			85	14	0.993533
841	85		14		0.993533
862		83	16		0.994512
868	16	83			0.994512
872	14			85	0.993533
873	14	85			0.993533
876		85		14	0.993533
877	85			14	0.993533
1061	20			80	0.995493
1062		20		80	0.995493
1063	20			80	0.995493
1064		80		20	0.995493
1073	33	66			0.997452
1076			66	33	0.997452
1077	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain