SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12223

Length: 1651 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12223 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7229	1/45
SustainPine v2.0	sp_v2.0_unigene7791	41/45
SustainPine v2.0	sp_v2.0_unigene60215	1/45

Source	Descriptions	Term	Type	Identity
AutoFact	Laccase n=2 Tax=Pinus taeda RepID=Q9AUI3_PINTA	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	laccase 90c	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Laccase.	EC:1.10.3.2	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	response to copper ion	GO:0046688	Biological Process	74%
Blast2go	lignin catabolic process	GO:0046274	Biological Process	74%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	copper ion binding	GO:0005507	Molecular Function	74%
Blast2go	laccase activity	GO:0008471	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	apoplast	GO:0048046	Cellular Component	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRA7

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 547 - 570

Fln protein: ITNASNRQLYLH*LNRR*LPGYARIIQLSPFNGQLPGPMIHVRDGDTVVVETYNKAEYNATLHWHGVEQWRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHEFTVVAVDACYTKPYKTDVLVISAGQTTDVLITANQSVGRYYMAARAYQNQAAGDFTNTTTTAILEYIGSENSTRPILPSLPAYNDTATVTRFGRALRSLASQEYPVNVPHTIDESLISTVGLGLLPCGSGKTCEGPNGTRLSASINNISYVEPTISLLQAYYYTVNGIFTGDFPSKPAVRFNYTGHDIPRKFWAPDPATKVKVLEYNSTVQIVFQSTNIFVAENHPMHLHGYNFYVVGDGFGNYNPDTDPLKFNLLDPPQRNTVIAPVSGWVAIRFRANNPGMWFLHCHLDDHFTWGLNMVFLVKNGQGPLETLEPPPPDLPAC*

Protein Length: 548

Fln nts: ATCACAAATGCTAGCAATCGTCAATTATACCTTCACTAATTGAACCGAAGATAGTTACCAGGCTATGCAAGAATTATACAGTTGTCACCGTTCAATGGACAGCTACCAGGTCCAATGATTCATGTACGTGACGGGGACACTGTTGTTGTGGAAACTTATAACAAGGCTGAGTACAATGCTACTCTTCACTGGCATGGAGTGGAGCAGTGGCGTACGGCATGGGCTGATGGACCTGCATATGTTACACAATGCCCAATTCCACCAGGTGGTCGTTACACATACAGATTCAACATCTCTGGACAAGAAGGAACCGTGTGGTGGCATGCCCATTACTCATGGCTCCGAGCTACTGTGCATGGAGCTTTTGTAATCCTTCCTAAGAAAGGAAGCTCATATCCCTTTTCTAAACCCCATGCCGAAATTCCTATTGTAATAGGCGAATGGTGGAACGCTAACCCCATCGCCGTTATAGACGAAGCGGTTCGCACAGGTGGTGCGCCTAATTTATCCGATGCCTTCACCATAAATGGACAGCCAGGAGATCTGTTTAACTGCTCTACCTCGGGAACATTTCGCCTCCCTGTAAAAAGTGGAGAAACGTACCTTCTGCGGATTGTGAATGCTGCACTCAATAGCGGGCACTTTTTCAAGATAGCAGGCCACGAATTTACAGTAGTAGCTGTGGATGCTTGTTACACCAAGCCATACAAAACAGATGTGCTCGTCATATCTGCCGGCCAGACGACAGATGTTCTTATCACGGCCAACCAGTCTGTGGGCAGATACTATATGGCCGCCCGAGCGTATCAAAATCAAGCGGCAGGCGATTTCACCAACACCACAACAACTGCCATTCTAGAGTACATTGGAAGTGAAAATTCTACGCGCCCAATTTTGCCTAGCCTTCCAGCCTACAACGACACTGCCACTGTCACTAGATTTGGCAGAGCACTGCGAAGCCTGGCATCCCAGGAGTACCCTGTGAATGTTCCGCACACAATAGATGAAAGCCTCATCTCAACGGTTGGACTGGGGCTGCTTCCGTGTGGCTCTGGGAAAACCTGTGAAGGCCCCAACGGAACGAGGCTGAGTGCAAGTATCAACAACATATCGTATGTAGAGCCCACGATCTCGTTGCTTCAAGCATATTATTACACTGTCAATGGTATCTTTACGGGGGATTTTCCATCAAAACCTGCAGTTAGATTCAACTACACGGGGCACGATATACCCCGAAAATTTTGGGCTCCGGACCCCGCGACAAAAGTGAAGGTGCTCGAATACAACTCCACAGTGCAGATCGTTTTTCAGTCAACAAACATCTTCGTGGCAGAGAACCATCCCATGCATCTTCATGGTTACAATTTTTATGTGGTGGGAGATGGCTTCGGGAACTATAACCCGGACACCGACCCGCTTAAATTTAATCTGCTTGATCCTCCACAGCGCAACACAGTAATCGCTCCAGTCAGCGGGTGGGTTGCCATACGATTCAGAGCAAACAATCCAGGAATGTGGTTTCTGCACTGCCATTTGGACGACCATTTCACGTGGGGATTAAATATGGTGTTTCTAGTGAAGAACGGTCAAGGTCCCTTGGAAACATTGGAGCCCCCTCCTCCCGACCTCCCCGCGTGCTAG___AGGATACATT

Fln Alignment:

Contig12223___NGQLPGPMIHVRDGDTVVVETYNKAEYNATLHWHGVEQWRTAWADGPAYVTQCPIPPGGRYTYRFNISGQEGTVWWHAHYSWLRATVHGAFVILPKKGSSYPFSKPHAEIPIVIGEWWNANPIAVIDEAVRTGGAPNLSDAFTINGQPGDLFNCSTSGTFRLPVKSGETYLLRIVNAALNSGHFFKIAGHEFTVVAVDACYTKPYKTDVLVISAGQTTDVLITANQSVGRYYMAARAYQNQAAGDFTNTTTTAILEYIGSENSTRPILPSLPAYNDTATVTRFGRALRSLASQEYPVNVPHTIDESLISTVGLGLLPCGSGKTCEGPNGTRLSASINNISYVEPTISLLQAYYYTVNGIFTGDFPSKPAVRFNYTGHDIPRKFWAPDPATKVKVLEYNSTVQIVFQSTNIFVAENHPMHLHGYNFYVVGDGFGNYNPDTDPLKFNLLDPPQRNTVIAPVSGWVAIRFRANNPGMWFLHCHLDDHFTWGLNMVFLVKNGQG
C0PRA7__________________NGQLPGPTIHVHNGDTVIVKAYNRAQHNATLHWHGVKQLRTGWADGPAYITQCPIPPGGHYTQRFTITGQEGTLWWHSHISWLRATVHGAIVILPQRGSLYPFPKPRAEIPIIIGEWWNKDPITVINQAILTGGAPNLSDAFTINGQPGDLYPCSTSETFRLPVKRGETYLLRIVNAALNTGHFFKIARHKFTVVAVDASYTKPYKTDVIVISAGQTTDVLVTADQPVGKYYMAARPYNNQAAGAFDNTTTTAIIEYIGYQNSTRPIFPKLPFYNDTPVVTKFSKALRSLASPEHPVEVPQTVHKSFISTVGLGLLPCETGNTCEGPNGTRLSASMNNVSFVDPTIAILQANYFGINGVFSTDFPSKPPHKFNYTGDDIPRNLWFPLPATKVKVLNYNATVQLVFQSTNIFVAENHPMHLHGYNFYVIGEGFGNYNPKTDPLKFNLVDPPERNTVIAPVSGWVAIRFKADNPGVWFLHCHLDDHLVWGLNMVFIVKNGHG

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
565	33		66		1.0
566		66		33	1.0
567		66	33		1.0
635	11		88		0.923564
639	88			11	0.923564
732	11			88	0.923564
734	11		88		0.923564
813	25		75		0.996473
814		25		75	0.996473
815	25		75		0.996473
1136			66	33	0.997452
1143	25		75		0.996473
1146	75		25		0.996473
1253	75		25		0.996473
1362	10		90		0.90298
1444	33	66			1.0
1473	71		28		1.0
1474	14		85		0.993533
1483	16			83	0.994512
1486			83	16	0.994512
1487		83		16	0.994512
1515	25		75		0.996473
1516		25		75	0.996473
1517	25	75			0.996473
1518		75		25	0.996473
1519		75		25	0.996473
1537	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain