SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12194

Length: 1653 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12194 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23701	111/125
SustainPine v2.0	sp_v2.0_unigene23734	4/125
SustainPine v2.0	sp_v2.0_unigene23998	1/125
SustainPine v2.0	sp_v2.0_unigene60603	8/125

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-11 n=180 Tax=Spermatophyta RepID=ACT11_ARATH	-	-	96%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	actin	-	-	99%

Source	InterPros	Term	Type	e value	Identity
Sma3	Actin, conserved site	IPR004001	-	0.0	-
Sma3	Actin-like	IPR004000	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNW2

Fln msg:

Fln protein: MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*

Protein Length: 379

Fln nts: CGGGAGTGTAAGCATAGCATTTCATTTCTCGGTGAAGGAAAGGAAAGGAAAGAAGGAAAGAGCTCAGACGACGGGCACTGCACGCCGTCAATTTTCGTCTCTATTTCGCGTTTGCAGTTATCTCGCAATTTAATTGAAG_-_ATGGCTGACGCAGAGGATATCCAGCCCCTTGTCTGTGACAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGCCCTCGTCATACTGGAGTCATGGTGGGGATGGGGCAGAAGGATGCATATGTAGGTGATGAGGCTCAATCTAAAAGAGGTATTCTTACTTTGAAGTATCCTATTGAGCATGGGATAGTCACCAACTGGGATGATATGGAGAAGATTTGGCATCATACCTTTTACAATGAGTTACGAGTTGCTCCAGAAGAACACCCTATTCTCCTCACCGAAGCACCTTTGAATCCCAAGGCAAACAGAGAGAAGATGACTCAGATTATGTTTGAGACATTCAATACACCTGCAATGTATGTTGCCATTCAAGCTGTTCTTTCTCTTTATGCAAGTGGTCGAACAACTGGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTTCCCATATATGAAGGATATGCTCTTCCACATGCTATTCTCAGGCTAGATCTTGCTGGTCGGGATCTGACTGATGCTTTGATGAAGATCCTGACTGAAAGAGGTTATTCATTCACCACTACGGCAGAACGTGAAATTGTTCGTGATATGAAAGAGAAACTTGCTTATGTAGCCCTTGACTACGAGCAGGAGCTTGAGACAGCCAAGACGAGTTCCTCCCTGGAAAAGAGTTACGAGCTTCCTGATGGGCAAGTAATCACCATTGGTGCAGAGCGTTTCAGATGCCCCGAGGTCTTGTTCCAACCTTCGCTAATTGGAATGGAAGCTGCTGGCATTCATGAGACAACATACAATTCCATCATGAAGTGCGACGTGGATATCAGAAAGGATCTGTATGGAAATATTGTTCTCAGTGGAGGATCTACCATGTTTCCTGGTATTGCCGATCGTATGAGCAGGGAGATTACTGCCCTGGCCCCAAGTAGTATGAAGATCAAGGTGGTTGCACCTCCTGAAAGGAAGTACAGTGTCTGGATCGGAGGATCAATCTTGGCATCTCTGAGTACATTCCAACAGATGTGGATTGCCAAGGCTGAGTATGATGAATCTGGTCCGTCAATTGTTCACAGAAAGTGTTTCTAA___TTTTCAGTGGCTTAGTAGTTTTTAGAGTTCCCAAGCAGTATTGCAGTTATTATGAAGTTGAGTAGGTGATCACGGGTATATTATATTCAGCTATTTCGATGCAGTTAGAGTATATAGTCTTGTCATGGTAGAGATGATAGAGGTACATTTTTGCATGGTTGCGTCCTTGTTTGTTGAATGGCAAGATTTTAGCCCGAAATCTGTCGCCCATTTTTTATTTATTTTGTACTGTGTAATAGCGTGCATGGAGGATGCATATTTTGAATCTCTCCAATGTCATAGTGCATGAGAAACGGACTGTCTTACAGTTCATAATGTACTGCTCAATCACCTATTATTATTTATGGTTTCATGTTTGAATCTATTTTGAACTGTGACGG

Fln Alignment:

Contig12194___MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
B8LNW2__________________MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELETAKTSSSLEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKTEYDESGPSIVHRKCF

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
42	88		11		0.923564
82	11	88			0.923564
83			88	11	0.923564
149	50	50			1.0
169	75	25			0.996473
172			85	14	0.993533
226		14		85	0.993533
227	16		83		0.994512
228		80		20	0.995493
229	80			20	0.995493
364	83			16	0.994512
365		85	14		0.993533
700	9	90			0.999842
701	9			90	0.999842
703		90	9		0.999842
704		90		9	0.999842
716	9	90			0.999872
717		9	90		0.999872
719	90			9	0.999872
720			90	9	0.999872
852	10		89		0.999919
855	85		4	9	0.999726
856		89		10	0.999919
977	8	16		75	0.99999
1001	77	11		11	0.968132
1002	10		90		0.90298
1003		80		20	0.999996
1004	80			20	0.999996
1005			11	88	0.923564
1007			11	88	0.923564
1008	11	88			0.923564
1011			11	88	0.923564
1085	85	14			0.993533
1087		14	85		0.993533
1089			85	14	0.993533
1090	85			14	0.993533
1158		14		85	0.993533
1218	14		85		0.993533
1219		14	85		0.993533
1221			85	14	0.993533
1222		85		14	0.993533
1398			83	16	0.994512
1399			83	16	0.994512
1500		11		88	0.923564
1501	11	88			0.923564
1502		88		11	0.923564
1552	83			16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1602	1619	CTTTC CTTTC CTTTC CTT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain