SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12089

Length: 923 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12089 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24055	1/49
SustainPine v2.0	sp_v2.0_unigene27331	3/49
SustainPine v2.0	sp_v2.0_unigene61250	44/49
SustainPine v2.0	sp_v2.0_unigene79555	1/49

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=2 Tax=Picea sitchensis RepID=A9NLJ2_PICSI	-	-	93%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	proteasome subunit beta type-6	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	regulation of plant-type hypersensitive response	GO:0010363	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	response to zinc ion	GO:0010043	Biological Process	91%
Blast2go	peptidase activity	GO:0008233	Molecular Function	91%
Blast2go	proteasome complex	GO:0000502	Cellular Component	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
414		90	10		0.90298
415		90		10	0.90298
617	77			11	0.968132
618		11		77	0.968132
686	11			88	0.923564
707		11		88	0.923564
708		11	88		0.923564
709	88	11			0.923564
710	88	11			0.923564
734		10		90	0.90298
756	12	87			0.992554
758	12		75		0.975346
759	87			12	0.992554
760			75	12	0.975346
763		85		14	0.993533
764		85		14	0.993533
843	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain