SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12076

Length: 1634 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12076

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16416	271/276
SustainPine v2.0	sp_v2.0_unigene82064	2/276

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamine synthetase n=2 Tax=Pinaceae RepID=Q9ZS52_PINSY	-	-	90%
FL-Next	sp=Glutamine synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	glutamine synthetase	-	-	94%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine synthetase, beta-Grasp	IPR008147	-	-
Sma3	Glutamine synthetase/guanido kinase, catalytic domain	IPR014746	-	-
Sma3	Glutamine synthetase, catalytic domain	IPR008146	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSW2

Fln msg:

Fln protein: MSLLTDLINLDLSDVTEKIIAEYIWIGGSGMDIRSKARTLSHPVTDPKDLPKWNYDGSSTGQAPGKDSEVILYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGYPGPQGPYYCGTGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYLLERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEHEGKGYFEDRRPASNMDPYIVTSMIAETTILLK*

Protein Length: 357

Fln nts: GAATAGAGGTTTCTTAATTCCCCATCTTCTTTCATTGGTTTCTATAAATTCTTCCTCAGGTTGGGGTTGCCCTTTGCATCAATTGCTATAAATTCTTATTTCAGTGGCCTTTATTTCGAAATAGCAGATCAAAGGCCTTCACTGCTTGCAGAATTATACTTGTGCGGGAGTCTGTGATTTTGTTGTACATCCAAG_-_ATGTCTCTACTGACGGATTTGATCAACTTGGACCTCTCTGATGTCACTGAGAAGATCATCGCTGAGTACATATGGATCGGAGGCTCTGGCATGGATATCCGCAGCAAGGCCAGGACCTTATCTCACCCAGTTACGGACCCCAAAGATCTACCCAAGTGGAATTATGATGGATCCAGTACTGGACAGGCTCCTGGAAAGGACAGTGAAGTCATCCTTTACCCTCAGGCTATCTTCAGGGATCCATTCCGCAGGGGGAACAACATCTTGGTGATTTGTGATACATATACCCCAGCTGGAGAACCTATTCCTACTAACAAGAGAGCAAATGCTGCAAAAATATTTAGCCATCCAGATGTTGTTGCCGAGGAACCATGGTACGGGATTGAACAAGAATACACTCTTCTGCAAAAGGATGTGAATTGGCCTCTTGGATGGCCCGTAGGTGGTTACCCTGGTCCTCAGGGTCCTTATTATTGTGGAACTGGAGCAGACAAAGCCTACGGCCGTGATATCGTCGATGCCCACTATAAGGCTTGCCTGTATGCAGGAATCAACATTAGTGGCATCAATGGAGAAGTCATGCCCGGTCAATGGGAATTTCAAGTTGGCCCGACGGTTGGTATTTCATCTGGTGATCAAGTCTGGGCTGCACGTTACCTTCTTGAGAGAATCACAGAAGTGGCTGGTGTTGTCCTCTCATTTGACCCCAAACCCATTCAGGGTGATTGGAATGGTGCTGGTGCTCACACTAACTACAGTACGAAATCAATGAGAGAAGAAGGGGGAATTAAAGTGATCAAAAAGGCCATTGAAAAGTTAGGGTTGAGGCATAAGGAACACATTGCTGCCTATGGAGAGGGCAACGAGAGGCGTTTGACTGGCCGACATGAGACAGCAGACATAAACACATTTTCATGGGGAGTTGCAAATCGTGGAGCTTCTATTCGAGTTGGCCGTGACACGGAACATGAAGGCAAAGGGTACTTCGAAGACCGCAGGCCAGCTTCCAACATGGACCCCTATATTGTAACATCTATGATTGCTGAGACAACCATCCTTTTGAAGTGA___GAGTAACATTGTTTACTGAATGAATAAAGATGCCGATACGATTGAAGTGTTCTTGATGCTAGTCAAATTGCGAAGGGATCCCCAATTGTTTGTGGGGGATATTCTCATTTGAATTTCTCTCTGTGCCTGAAGTATTTCCCCTATTTCTGTTAATAAGAACATTCTAGAAATAGGACTTGAGATTTAGGGTGCATTATATTCAGTGTCTAGTTTGTCATTCAGATTTGCATTATTCCATGACTCTGATATGATTGGTGTGCAGTTGAATTTAATGAATTCAGAAGTTCTTTTATTGCTTGCGAACGTTGGAGTTATTTCTTGCTGTCTTCTACTTTTTGGAAACATTGACAGAGCTTGGAAGGCTCTTTGTT

Fln Alignment:

Contig12076___MSLLTDLINLDLSDVTEKIIAEYIWIGGSGMDIRSKARTLSHPVTDPKDLPKWNYDGSSTGQAPGKDSEVILYPQAIFRDPFRRGNNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLXXXXXXXXXXXXXXXXXXXADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYLLERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEHEGKGYFEDRRPASNMDPYIVTSMIAETTILLK
A9NSW2__________________MSLLTDLINLNLSDVTEKIIAEYIWIGGSGTDIRSKARTLSHEVSDPKDLPKWNYDGSSTGQAPGKDSEVIIYPQAIFRDPFRRGKNILVICDTYTPAGEPIPTNKRANAAKIFSHPDVVAEEPWFGIEQEYTLLQKDVQWPLGWPIGGYPGPQGPYYCGTGADKAYGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPTVGISSGDQVWAARYILERITEVAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMREEGGIKVIKKAIEKLGLRHKEHISAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYIVTSMITETTILLK

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
558		48		51	1.0
875	8		88	4	0.999262
877			91	8	0.999766
977	7		78		0.999974
981	14		78	7	0.999974
982	84	15			0.999986
1077	11		88		0.999952
1079	11	88			0.999952
1080			88	11	0.999952
1081	88			11	0.999952
1142	7	92			0.999664
1143		7	92		0.999664
1187			90	9	0.999842
1258	10		90		0.90298
1259	90	10			0.90298
1526			90	10	0.90298
1545	14		85		0.993533
1546	85	14			0.993533
1548			85	14	0.993533
1553	20			80	0.995493
1554		20		80	0.995493
1568		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain