SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12073

Length: 1395 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene12073 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16033	133/136
SustainPine v2.0	sp_v2.0_unigene61639	2/136

Source	Descriptions	Term	Type	Identity
AutoFact	Putative chitinase n=1 Tax=Epipremnum aureum RepID=D2KZ17_9ARAE	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	class i chitinase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Chitinase.	EC:3.2.1.14	-	0.0	79%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	79%
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	79%
Blast2go	regulation of carbohydrate biosynthetic process	GO:0043255	Biological Process	79%
Blast2go	response to water deprivation	GO:0009414	Biological Process	79%
Blast2go	response to salt stress	GO:0009651	Biological Process	79%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	79%
Blast2go	response to heat	GO:0009408	Biological Process	79%
Blast2go	response to nitrate	GO:0010167	Biological Process	79%
Blast2go	lignin biosynthetic process	GO:0009809	Biological Process	79%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	79%
Blast2go	chitinase activity	GO:0004568	Molecular Function	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPT3

Fln msg:

Fln protein: MAMGRICLVVLLALALCLNVSLASKKMKICDKGWECKGVYCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQQKELAAFLGNVAAETSCGYNVATGGPTAWGLCYKEEMSPDQLYCDQNFLYPCAPGASYHGRGALPIYWNFNYGPIGEALKLDLLNYPDMVSNNATIGFLTAMWRWMNPIKPKQPSAHDVIVGNWKPTKNDTLSYRLPGFGMVINVLNGGLECGKGDIDAMSNRISHYLYFLDLMGIGREKAGDNLDCGEQVPLNPVSTSATSR*

Protein Length: 304

Fln nts: ACGAGATCGAATCTCATTCGATAAAAGGCAAGCCAGAAGAAGAAGAGGTCCCTGAATATTGGCATTAAGGTTCAAAATCTTCCTAGATCTGGCGGAGATCTCGCCTGTC_-_ATGGCGATGGGAAGGATTTGTTTGGTTGTTTTGTTGGCATTGGCACTGTGTTTGAATGTTTCACTGGCGTCGAAGAAGATGAAGATCTGCGACAAGGGATGGGAATGCAAGGGGGTTTATTGCTGCAACCAGACTATATCGGAAATTTTCACAGTGGACAATTTCGAACAACTCTTCTCCAAGAGGAATACCCCGGTGGCTCATGCGGTCGGTTTCTGGGATTACTATTCCTTCATCAACGCGGCTGCACAGTTCGAGGGCATAGGATTTGGTACTACTGGAGGACAGGTGATGCAGCAGAAGGAGCTTGCAGCCTTCCTTGGCAATGTTGCAGCTGAAACTTCATGTGGTTACAATGTTGCTACTGGTGGTCCAACTGCTTGGGGTTTGTGCTACAAAGAAGAAATGAGTCCGGACCAGCTTTACTGTGATCAAAATTTTCTATACCCTTGCGCTCCAGGAGCCAGTTACCATGGACGTGGTGCCCTGCCTATTTACTGGAACTTTAACTACGGACCGATTGGTGAAGCACTGAAACTTGATTTGCTTAATTATCCAGACATGGTGTCAAACAATGCCACGATAGGATTTCTAACTGCAATGTGGAGGTGGATGAATCCCATCAAGCCAAAACAGCCCTCTGCTCATGACGTAATTGTGGGTAACTGGAAACCAACCAAAAATGACACTCTATCATATAGGCTCCCTGGTTTTGGAATGGTCATCAATGTTCTAAATGGGGGTTTAGAGTGTGGGAAAGGGGATATTGATGCAATGAGCAACAGGATTTCACATTACCTGTATTTCCTTGATTTGATGGGCATTGGACGAGAAAAAGCCGGTGATAATCTTGATTGTGGCGAGCAAGTTCCTCTTAACCCTGTATCAACTTCTGCCACCTCTCGTTAG___CGGGCAGTCTGTAGTTTTATCTATCCAAGGCCATCCTTGATCCAATTGATAGTAGCGTAAATAAAGGAGCATGCCTTTGACCATTATGTGTATTGTTTGGGCTCTTTATTTCACAGTTAGGAAGTTTGGTTCCGTTCAGTGATGAAATAATAGAATGGATCTCTCTTCCTATTTGTAGGTGATTGTGATAAGGTTTGTTGCCGGTTATGTAAAATATACCAGCAGCGCTTTCTAAGAAACGCTATTTGTGCAATGACTTAATTTAATTATTGTGGATCACATGATCAAAATATGTTATTTATTATTTTGTGCAAGCCAGCTATTGCCGAGGCCTGAAATATCTGTATAAACATATATCATTGTATAAACATGTATCA

Fln Alignment:

Contig12073___KMKICDKGWECKGVYCCNQTISEIFTVDNFEQLFSKRNTPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQVMQQKELAAFLGNVAAETSCGYNVATGGPTAWGLCYKEEMSPDQLYCDQNFLYPCAPGASYHGRGALPIYWNFNYGPIGEALKLDLLNYPDMVSNNATIGFLTAMWRWMNPIKPKQPSAHDVIVGNWKPTKNDTLSYRLPGFGMVINVLNGGLECGKGDIDAMSNRISHYLYFLDLMGIGREKAGDNLDCGEQVPLNPVSTSATSR
C0PPT3__________________KTKICDKGWECKGVYCCNQTISQIFTVDNFEELFSKRNSPVAHAVGFWDYYSFINAAAQFEGIGFGTTGGQLMQQKELAAFFGHVAAETSCGYSVAVGGPYAWGLCYKEEMSPDQLYCDQNYLFPCSPGASYHGRGALPLYWNYNYGQIGEALKLDLLNYPDLLSNNATIGFQTAIWRWMNPIKPKQPSAHDVLVGNWKPTKNDTASFRFPGFGMTINVLNGGLECGQGDIEAMSNRVSHYLHFLDLMGVGRELAGDHLDCGEQVALNPVSNSATSR

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
676	25	50		25	0.995533
677		75		25	0.996473
706	20		80		0.995493
707	20		80		0.995493
708		80		20	0.995493
709	80		20		0.995493
729	16		83		0.994512
738			85	14	0.993533
739		85	14		0.993533
740	85			14	0.993533
769	12			87	0.992554
770	12	87			0.992554
771		87		12	0.992554
1065		90		10	0.90298
1066	11	88			0.923564
1069			88	11	0.923564
1070	88			11	0.923564
1137	88	11			0.923564
1139	88			11	0.923564
1155	11		88		0.923564
1156	11		88		0.923564
1267	87			12	0.992554
1268	87			12	0.992554
1308	14	85			0.993533
1332	14	85			0.993533
1335	85			14	0.993533
1344		20	80		0.995493
1345	80	20			0.995493
1348			20	80	0.995493
1350			20	80	0.995493
1351	20			80	0.995493
1369		25		75	0.996473
1370		25		75	0.996473
1371		25		75	0.996473
1372	50	25	25		0.995533

SSRs (tot: 1)

Start position	End position	Sequence	Length
1350	1361	TCT TCT TCT TCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain