SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12071

Length: 1200 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12071

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22904	2/117
SustainPine v2.0	sp_v2.0_unigene23555	2/117
SustainPine v2.0	sp_v2.0_unigene60251	82/117
SustainPine v2.0	sp_v2.0_unigene60461	29/117

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp\|Q42262.3\|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb\|CAA04689.1\| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb\|CAA18846.1\| Putative S-phase-specific ribosomal pro	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	40s ribosomal protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV8

Fln msg:

Fln protein: MAVGKNKRISKGKKGGKKKAVDPFSKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVREAVSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLQKLMEVHGDYSEDVGVKVDRPADEVPAEVETELVGA*

Protein Length: 263

Fln nts: GATCTCAAAATCAGAAAGAAAATGTTAGGGTTCTGATATAGAAGGGTTTTTGAGGGTGCGGTTGTTCTCTGAGCTGCTTGTGCGAGAACA_-_ATGGCCGTCGGGAAGAACAAACGCATATCCAAGGGAAAGAAGGGAGGCAAGAAAAAGGCTGTAGATCCCTTCTCAAAGAAAGATTGGTATGATGTGAAAGCTCCTTCTACTTTTAATACAAGGACAGTTGGAAAGACCCTTGTTACACGGACTCAGGGTACTAAGATTGCATCTGAAGGGCTTAAGCATCGTGTGTTTGAGGTTTCATTAGCTGATCTTCAGAATGATGAAGATCAGGCTTACAGAAAGATCAAGCTTCGTGCAGAGGATGTTCAAGGAAGGAATGTCCTCACTAACTTCTGGGGAATGGATTTCACCACTGATAAGCTTAGATCCTTGGTCCGCAAGTGGCAGACTTTGATTGAAGCTCATGTGGATGTTAAGACAACAGATAACTATGGTTTGCGTATGTTCTGCATTGGATTCACAAAGAGGAGGCCCAATCAAGTCAAGCGAACATGCTATGCCCAATCGAGTCAAATAAGACAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTGTTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCCGAGGTGATTGGAAAGGAGATTGAAAAAGCTACTTCCTCAATTTATCCTCTTCAAAATGTATTCATCAGAAAAGTTAAAATTTTGAAGGCTCCAAAATTTGACCTACAAAAGCTTATGGAGGTACATGGAGATTATTCCGAGGATGTTGGAGTCAAGGTTGATAGGCCAGCTGATGAGGTGCCTGCTGAAGTAGAGACTGAACTTGTCGGTGCTTAG___GTAGTTGTCAGCTGCAAGAAGTTGATTTAGAGGAATAGATATTATTATTGAATATGGGGTTGATAAATTTGAGTTTCTGCAGCTCAATTATACTTTGGTTGACCAGTTCTTAGGTTCAAAAGTTTTCAGTTTTACATTATTGCTACCATATAATTATTGAGGCCAAATATTTGTCTCAATATTTTGTTACCGGACATGAACCATGCTGTTCTTTGCTACGAGCAGCAGATGCTGAGAGTTGGATCCTTGTCTAAATTGGTGTTTGCCTTCTTGTTTTAATTTTGTTCTTTGGATTTTCAAATTCTGTATATGCTGATGTAACCT

Fln Alignment:

Contig12071___VDPFSKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVREAVSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLQKLMEVHGDYSEDVGVKVDRPADEVPAEVETELVGA
A9NNV8__________________VDPFTKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFELSLADLQNDEDQAFRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMTEIMIREASSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRTTEEAPAEAEAELVGA

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
544		80		20	0.995493
546	80			20	0.995493
577		80		20	0.995493
615	92	7			0.999532
616	7		92		0.999532
617		92		7	0.999532
793		10		90	0.90298
900		18	81		0.999994
906		10	90		0.90298
908			90	10	0.90298
909			90	10	0.90298
922		11		88	0.923564
949		12	87		0.992554
950	12			87	0.992554
955	11		88		0.923564
959		88		11	0.923564
983	12			87	0.992554
984		12		87	0.992554
985	12	87			0.992554
1011	14	85			0.993533
1058	14			85	0.993533
1060			14	85	0.993533
1069	11		88		0.923564
1071		88	11		0.923564
1072	88			11	0.923564
1081			88	11	0.923564
1091	12		87		0.992554
1094	87			12	0.992554
1141	20		80		0.995493
1143	20	80			0.995493
1149	33		66		0.997452
1150		33		66	0.997452
1151	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain