SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene12061

Length: 1897 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene12061

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15538	141/266
SustainPine v2.0	sp_v2.0_unigene18038	1/266
SustainPine v2.0	sp_v2.0_unigene60357	118/266
SustainPine v2.0	sp_v2.0_unigene77103	6/266

Source	Descriptions	Term	Type	Identity
AutoFact	Serine hydroxymethyltransferase n=2 Tax=Picea sitchensis RepID=A9NUX0_PICSI	-	-	96%
FL-Next	sp=Serine hydroxymethyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	serine hydroxymethyltransferase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	glycine decarboxylation via glycine cleavage system	GO:0019464	Biological Process	89%
Blast2go	response to cold	GO:0009409	Biological Process	89%
Blast2go	photorespiration	GO:0009853	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	poly(U) RNA binding	GO:0008266	Molecular Function	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	stromule	GO:0010319	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Serine hydroxymethyltransferase	IPR001085	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUX0

Fln msg:

Fln protein: MAMRTVAAFATRVSRRHVFKSSVTQFAHRYSSEAAYSRTEKEKSHVTWPKQLNAPLQELDPEISDIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYEQLERSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAQCLINRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEDDFAKVAEFFDLAVQLSMKIKSETKGGTKLKDFKATIESSPAIQDEIRSLRHAVEEYAKQFPTVGFEKSSMKYKE*

Protein Length: 521

Fln nts: CGCAGAGTACGCGGGGATCAACTCATCTATAAGGAAACCACAGTCTCGTAGATTGTGCGGCAGAGGTTGAGATTGGAATTGAGATTGGGGTGGGCA_-_ATGGCGATGAGAACAGTTGCTGCTTTTGCGACAAGGGTTTCCAGACGTCACGTGTTCAAATCCTCTGTGACTCAGTTTGCTCACCGATACTCCTCTGAGGCGGCTTATTCTCGAACTGAAAAAGAAAAATCACATGTTACGTGGCCAAAGCAATTGAATGCACCATTACAAGAGTTGGATCCTGAGATTTCAGACATAATTGAGCTAGAAAAGAATAGGCAATGGAAGGGACTTGAACTTATTCCTTCGGAAAACTTCACCTCATTATCAGTTATGCAAGCTGTAGGGTCAGTCATGACCAATAAGTACAGTGAAGGCTATCCTGGTGCAAGATACTATGGAGGAAATGAGTTTATTGATATGGCAGAGTCCTTATGTCAGAAAAGAGCCTTGGAAGCATTTCGTCTGGATCCAAAGAAATGGGGAGTTAATGTACAACCTTTATCAGGGTCTCCTGCAAATTTTCATGTCTACACGGCATTGCTGAAGCCACATGATCGAATCATGGCACTTGATCTCCCACATGGTGGTCATTTATCTCATGGTTACCAGACGGATACCAAAAAGATTTCCGCAGTCTCGGCATACTTTGAGACAATGCCGTACAGATTGAACGAATCAACTGGTATTATCGACTATGAACAGCTGGAGAGGAGTGCAACCCTTTTCAGACCCAAACTCATTATTGCAGGTGCTAGTGCTTACGCACGCCATTACGACTATGCTAGGATGCGCAAGATTTGTGACAAGCAAAAAGCTGTGCTGCTGGCGGATATGGCTCATATAAGTGGACTGGTAGCAGGAGGTGTTGTTCCATCTCCTTTTGATTTTGCAGATGTAGTGACGACAACTACACACAAGTCACTGCGTGGTCCACGTGGTGCAATGATCTTTTACAGGAAGGGTCTCAAGGAAGTTAACAAGCAAGGTCAAGAAGTTATATATGATTACGAGGACAAGATTAATGCAGCTGTATTCCCAGGTCTTCAAGGTGGTCCACATAATCATACTATAACAGGGTTAGCTGTTGCACTCAAACAGGCTGCTACTCCTGAATTTAAATCATATCAAGAGCAAGTTCTCAGCAATTGTGCTCATTTTGCGCAGTGTCTTATCAATAGAGGATATGAACTTGTTTCTGGTGGGACAGACAACCATTTGGTCCTGGTAAATTTGAAAAATAAGGGAATTGATGGTTCCAGGGTTGAAAGAGTGTTGGAACTGGCTCACATTGCAGCTAATAAAAACACAGTTCCTGGAGATGTCTCGGCAATGGTTCCTGGTGGAATTCGCATGGGAACCCCTGCTCTGACCTCAAGAGGTTTCATTGAGGATGATTTTGCAAAAGTTGCAGAGTTCTTTGATCTTGCAGTTCAATTAAGTATGAAAATCAAATCTGAAACAAAAGGTGGTACAAAGCTGAAGGACTTCAAGGCCACCATTGAAAGCAGTCCAGCCATACAGGATGAGATAAGAAGTCTTCGACATGCAGTTGAGGAGTATGCAAAGCAGTTTCCAACAGTTGGATTCGAAAAATCATCCATGAAATATAAGGAATGA___AATTACCTTGTGGTGTGAATAGGTCATGCCAGGCTTTGGTTTACAGTTTACACAGTTCCAAAGTGCATTGTTTACCAGAATTCCTCTGAGTTCAACTTCTGGTCTGTAATTTAACTAATACAAATGGTCAGAATCTAGCTCAAAGGGTGATGTAAATTTTCAGGCTTGATGTGCTGTACAAAAAATTCCAAAATGCATGGTAAAAATTACAAAATCTATGCTTACAAATTCCATGAACATT

Fln Alignment:

Contig12061___MAMRTVAAFATRVSRRHVFKSSVTQFAHRYSSEAAYSRTEKEKSHVTWPKQLNAPLQELDPEISDIIELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYEQLERSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAQCLINRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFIEDDFAKVAEFFDLAVQLSMKIKSETKGGTKLKDFKATIESSPAIQDEIRSLRHAVEEYAKQFPTVGFEKSSMKYKE
A9NUX0__________________MAMRTVAAFATRVSTRDVFKSSVTQFAQRYSSEAAYSRTEKEKSHVTWPKQLNAPLHEVDPEITDIVELEKNRQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAESLCQKRALEAFRLDPKKWGVNVQPLSGSPANFHVYTALLKPHDRIMALDLPHGGHLSHGYQTDTKKISAVSAYFETMPYRLNESTGIIDYDQLEKSATLFRPKLIIAGASAYARHYDYARMRKICDKQKAVLLADMAHISGLVAGGVVPSPFDFADVVTTTTHKSLRGPRGAMIFYRKGLKEVNKQGQEVIYDYEDKINAAVFPGLQGGPHNHTITGLAVALKQAATPEFKSYQEQVLSNCAHFAHCLIKRGYELVSGGTDNHLVLVNLKNKGIDGSRVERVLELAHIAANKNTVPGDVSAMIPGGIRMGTPALTSRGFLEDDFAKVAEFFDLAVQLSIKIKSETKGGSKLKDFKATIESSPAIQDEIRNLRHEVEEYAKQFPTIGFEKSSMKYKE

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
806	20	80			0.995493
807			80	20	0.995493
808		80	20		0.995493
809		80		20	0.995493
837	16			83	0.994512
839			16	83	0.994512
840			83	16	0.994512
1035	7			92	0.999664
1036		7		92	0.999664
1163		10		90	0.90298
1166		90		10	0.90298
1183	10	90			0.90298
1184	90	10			0.90298
1186		70		10	0.999998
1192	11			88	0.923564
1201	12		87		0.992554
1204	27		63	9	1.0
1269	90			10	0.90298
1377	10	90			0.90298
1514	88			11	0.999937
1515	88			11	0.999937
1604	90			10	0.90298
1605	90			10	0.90298
1609		11	88		0.923564
1610	12			87	0.992554
1665	16			83	0.994512
1666		16		83	0.994512
1667	16		83		0.994512
1669			83	16	0.994512
1677		80		20	0.995493
1678	20	80			0.995493
1695	20		80		0.995493
1696	14	14	71		0.984337
1697	28			71	1.0
1699			14	85	0.993533
1700	83			16	0.994512
1710		83		16	0.994512
1711	83			16	0.994512
1728	20			80	0.995493
1764	25			75	0.996473
1765	75	25			0.996473
1835	28	57			1.0
1836		42		57	1.0
1837	57			42	1.0
1845	16	83			0.994512
1856			80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain