SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11978

Length: 523 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11978
CTTCTTGCCTAAACCCCCGACACTTATTCTTCACGAGGAGATTGAATATCTTGAGTTTGAGAGACATGGAGCTGCTGGTACGAGTAGTATGTCTTCGCACTATTTTGATCTTATTATAAAGCTGAAGAGTGAGCAAGAGCATCAGTTCCGAAATATTCAGCGGAATGAATATCACAATCTTTTCAGCTTCATAAACACCAAGGGTTTAAAATCATCAATTTAGGAGCTACAGAAACTATTGGTGGAGTTGCAGCGGCTCTTCAGAATTCTGACGATGAAGCTGTAGATCCACATCTTGAGCGAATAAAAAATCTACGTGATGGTGGAGCCGGTGATGAAGACAGCGACGAAGAGGATGAAGACTTTGTTGCAGAAAACGATGATGCTGGATCTCCAACAGATGAGTCAGAAGAAGAGGGATCAGATGCAAGTGAGAGTGCAGAGGTCAAGCAACCTGCAAAGAAAGAAGAAAAGAAAAAAAAGGCGGTGGCTCCCAAGGCAACCGAGACCAAGAAGAAACATT

Ace file of the UniGene biog3_v1.0_unigene11978 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2189	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates chromatin transcription complex subunit SSRP1; AltName: Full=Recombination signal sequence recognition protein 1 emb\|CAA66480.1\| transcription factor [Vicia faba var. minor]	-	-	66%
FL-Next	sp=FACT complex subunit SSRP1-B; Oryza sativa subsp. japonica (Rice).	-	-	80%
Blast2go	fact complex subunit ssrp1	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	84%
Blast2go	DNA repair	GO:0006281	Biological Process	84%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	84%
Blast2go	DNA replication	GO:0006260	Biological Process	84%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	84%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	84%
Blast2go	DNA binding	GO:0003677	Molecular Function	84%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	84%
Blast2go	nuclear euchromatin	GO:0005719	Cellular Component	84%
Blast2go	FACT complex	GO:0035101	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR000910	-	0.0	-
Sma3	Structure-specific recognition protein	IPR000969	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q65WY8

Fln msg: Overlapping hits, possible frame ERROR between 211 and 208, Distance to subject end: 101 aas, your sequence is shorter than subject: 174 - 640

Fln protein: FLPKPPTLILHEEIEYLEFERHGAAGTSSMSSHYFDLIIKLKSEQEHQFRNIQRNEYHNLFSFINTKGxxxINLGATETIGGVAAALQNSDDEAVDPHLERIKNLRDGGAGDEDSDEEDEDFVAENDDAGSPTDESEEEGSDASESAEVKQPAKKEEKKKKAVAPKATETKKKH

Protein Length: 175

Fln nts: CTTCTTGCCTAAACCCCCGACACTTATTCTTCACGAGGAGATTGAATATCTTGAGTTTGAGAGACATGGAGCTGCTGGTACGAGTAGTATGTCTTCGCACTATTTTGATCTTATTATAAAGCTGAAGAGTGAGCAAGAGCATCAGTTCCGAAATATTCAGCGGAATGAATATCACAATCTTTTCAGCTTCATAAACACCAAGGGTxxxxxxxxxATCAATTTAGGAGCTACAGAAACTATTGGTGGAGTTGCAGCGGCTCTTCAGAATTCTGACGATGAAGCTGTAGATCCACATCTTGAGCGAATAAAAAATCTACGTGATGGTGGAGCCGGTGATGAAGACAGCGACGAAGAGGATGAAGACTTTGTTGCAGAAAACGATGATGCTGGATCTCCAACAGATGAGTCAGAAGAAGAGGGATCAGATGCAAGTGAGAGTGCAGAGGTCAAGCAACCTGCAAAGAAAGAAGAAAAGAAAAAAAAGGCGGTGGCTCCCAAGGCAACCGAGACCAAGAAGAAACATT

Fln Alignment:

Contig11978___FLPKPPTLILHEEIEYLEFERHGAAGTSSMSSHYFDLIIKLKSEQEHQFRNIQRNEYHNLFSFINTKGLxIINLGATE-TIGGVAAALQNSDDEAVDPHLERIKNLRXXXXXXXXXXXXXXDFVAENDDAGSPT
Q65WY8__________________FLPKPPTLILHEEIEYVEFERHGAGG-ASISSHYFDLLVKLKNDQEHLFRNIQRNEYHNLFNFISGKHLxILNLGEAQGRAGGVTAVLQSTDDDAVDPHLERIRN----QTGDDESDEEDEDFVADKDDSGSPT

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
357			16	83	0.994512
358		83		16	0.994512
387	14			85	0.993533
388	14	85			0.993533
413	88		11		0.923564
414	88			11	0.923564
428		75		25	1.0
437	87			12	0.992554
464	14	85			0.993533
468	85			14	0.993533
469	85			14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain