SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11911

Length: 1039 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11911

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8256	18/18

Source	Descriptions	Term	Type	Identity
AutoFact	Autophagy-related protein 3 n=1 Tax=Picea sitchensis RepID=A9NVL1_PICSI	-	-	95%
FL-Next	sp=Autophagy-related protein 3; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	autophagy-related protein 3	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	85%
Blast2go	autophagy	GO:0006914	Biological Process	85%
Blast2go	cytoplasm	GO:0005737	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Autophagy-related protein 3	IPR007135	-	0.0	-
Sma3	Autophagy-related protein 3, N-terminal	IPR007134	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVL1

Fln msg: your sequence is shorter than subject: 244 - 310

Fln protein: NVKQYLVTRNVPCFRRASALEEEYEATGGEFLLEDDGWLATHGAPKDDRSEEDNVPLIDALERQERRHIQPISSYFGVDEEEEIPDMAEYEEPDNAVDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLRPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSPQQ*

Protein Length: 245

Fln nts: AATGTCAAGCAATACTTAGTAACTAGAAATGTTCCATGTTTTCGTAGAGCAAGTGCTTTAGAAGAGGAATATGAGGCTACAGGAGGAGAATTTTTGCTTGAAGATGATGGGTGGTTAGCAACTCATGGTGCACCCAAAGACGATAGGAGCGAGGAGGATAATGTGCCTTTAATTGATGCATTAGAAAGACAGGAGAGGAGACATATACAGCCCATTTCATCCTACTTTGGAGTTGATGAAGAAGAAGAGATTCCCGACATGGCTGAATATGAAGAACCTGATAATGCAGTTGACATTGATGCAGCTACATTACAACCTCCATATTTGGTCGCAAATGAACCGGATGATGACAATATCCTTCATACACGCACATATGACGTGAGCATTACGTATGACAAATATTATCAGACTCCTCGAGTATGGCTTACAGGTTATGATGAGTCGCGGATGCTTTTGCGACCAGAGCTAGTGCTAGATGATGTTAGCCAAGATCATGCTCGCAAAACGGTCACAATTGAGGATCATCCTCACATGTCTGGAAAGCATGCATCTATACACCCTTGTCGTCATGGGGCTGTCATGAAGAAAATAATTGACGTATTGATGTCTAATGGAGGTGAACCAGAAGTTGACAAGTATCTATTTCTCTTCCTGAAATTCTTGGCATCAGTTATTCCTACAATTGAGTATGATTACACTATGGACTTTGCTTTGGGCAGCCCCCAACAATGA___TTGGAAGTAATGTGGAGATGGATTTGGAGATTTGCTTGGGGTTCCCTGCTTGCACAACTTGCTTTATATATTGGACTGGTTAAAGTTAGGGTTAAAGCTGATGTTCAAATAAGCTCTGCAAAAGTGGTGGAGTAAGGGGTTTCTAAAAGCACTGGTACTGGCACTTTTGCTACCAAATACACAGATTCGAATAGCAGGAACAAAAGTGGATATCGTAACTATCCAGTTGAGATGCTAAAGTCAAATGCTACATTACTTCATTTTAAGAGTCTGGAAGTTCGATGTAAATCTAAACTGTAAAGACATT

Fln Alignment:

Contig11911___KQYLVTRNVPCFRRASALEEEYEATGGEFLLEDDGWLATHGAPKDDRSEEDNVPLIDALERQERRHIQPISSYFGVDEEEEIPDMAEYEEPDNAVDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLRPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSPQQ
A9NVL1__________________KQYLITRNVPCFRRASDLEEEYEAAGGEFLIEDDGWLATHGAPKDDRSEEENVPSIDALERQERRHIHPISSYFGVNDEEEIPDMAEYEEPDNEDDIDAATLQPPYLVANEPDDDNILHTRTYDVSITYDKYYQTPRVWLTGYDESRMLLQPELVLDDVSQDHARKTVTIEDHPHMSGKHASIHPCRHGAVMKKIIDVLMSNGGEPEVDKYLFLFLKFLASVIPTIEYDYTMDFALGSSQQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
171		25		75	0.996473
500			85	14	0.993533
539	16			83	0.994512
542			83	16	0.994512
554		20		80	0.995493
555	20	80			0.995493
557	80			20	0.995493
595	88		11		0.923564
710	25			75	1.0
713	16		83		0.994512
715	20			80	0.995493
744	25			75	0.996473
745	75	25			0.996473
748			75	25	0.996473
815			66	33	0.997452
925		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain