SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11891

Length: 1174 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11891

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10145	19/20
SustainPine v2.0	sp_v2.0_unigene65030	1/20

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-18	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	43%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is shorter than subject: 235 - 431

Fln protein: CYLYSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLVEQWKPSDPDDEDCYGIDLDMTLPQALKKWQAFEDSNVDESIRSMDNTQSSIPTRPLGFADSFTSADGR*

Protein Length: 236

Fln nts: AATGTTATCTTTACAGTTTGGCTCACCAGAGTTTTATTCATAGAGATCTTAAGCCTTCAAATATACTTCTTGGAGATGATATGCGAGCCAAAGTGTCAGACTTTGGGCTTGTTAGGCTTGCGCCTGAAGGGAAATGCTCCATTGAAACCAGACTGGCGGGCACTTTTGGCTACCTTGCGCCTGAATATGCAGTCACTGGTCGTGTGACAACGAAGGCTGATGTTTTCAGTTATGGAGTGATACTTATGGAGCTCATAACAGGCAGAAGAGCTTTGGATGAAACACAGCCCGAGGAGAGTGTGCATCTGGTAACGTGGTTTAGACGGATGCATATCAGTAAAGAAACCTTTAGGAATGCAATTGACAAGGCTCTGGAAGTCACAGATGAGACATTCAAGAGCATTTGCACTGTTGCAGAACTAGCAGGTCACTGCACTGCACGGGAGCCATACCAGCGACCGGATATGGGTCATGCTGTTAGTGTGCTATCTCCTTTGGTTGAACAATGGAAACCCAGTGATCCAGATGATGAAGATTGTTATGGAATAGATCTGGACATGACTTTACCACAAGCACTGAAAAAATGGCAGGCCTTTGAGGACTCTAATGTAGATGAATCTATAAGAAGCATGGACAATACACAGTCCAGTATCCCCACAAGACCTTTAGGGTTTGCAGATTCCTTCACTTCAGCAGATGGTCGATAA___TCATTTTTTTGAAAATTCAGAGTCCAAATTATAAAAATCGGAGACATGATAGAGAAGCCAGGGGATGCTCTGATAAATTTGGCTATCCAAAAGTATTGGATGGAACAAATTTCAATCCTAGAAAATGTTTGTTTCAAGTTTTTGGTGGTAGGAAGTGGTGTTATTACTGACGAGTTCAATGAGTTCTCCAGATTCAAATAGCTCTTCATAATTTAAAGTGGAACACCGGACATGAGATACTGATTGTTGCTCCAGACACCTTGATGTTTAAAGGAATATCAATGAGTTTTCTCATTTTTAAATGCCTGCACTGCAATATCAATTCCTACGGGGAGCTAGGATTGGCCTAGTGCTTGGGTATTGTTTCAACTTTCAACCTTCTGGGACAGGTTTGAAGCAAGATCTGTATTGCAAGGTCTCTTCTGACCGAGAGTTTGAGCAGCAATATCCAGAAAGCTGCAGTAGGA

Fln Alignment:

Contig11891___YLYSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEG-KCSIETRLAGTFGYLAPEYAVTGRVTTKADVFSYGVILMELITGRRALDETQPEESVHLVTWFRRMHISKETFRNAIDKALEVTDETFKSICTVAELAGHCTAREPYQRPDMGHAVSVLSPLV
B8LKY1__________________FLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLS-GHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
473	33	66			0.997452
477		66		33	0.997452
595	20	80			0.995493
674	25		75		0.996473
675		25		75	0.996473
680	25	75			0.996473
785	33		66		0.997452
788	66		33		0.997452
842	33			66	0.997452
843	33			66	0.997452
1167		33	66		0.997452
1169	66			33	0.997452
1170	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain