SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11784

Length: 1301 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11784 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1822	7/13
SustainPine v2.0	sp_v2.0_unigene31048	6/13

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin alpha-2/alpha-4 chain n=384 Tax=Eukaryota RepID=TBA2_ARATH	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	alpha tubulin 1	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	protein polymerization	GO:0051258	Biological Process	92%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	92%
Blast2go	microtubule-based movement	GO:0007018	Biological Process	92%
Blast2go	GTPase activity	GO:0003924	Molecular Function	92%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	92%
Blast2go	GTP binding	GO:0005525	Molecular Function	92%
Blast2go	microtubule	GO:0005874	Cellular Component	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT17

Fln msg: Overlapping hits, possible frame ERROR between 648 and 648, and overlapping frame ERROR between 917 and 914, your sequence is shorter than subject: 422 - 451

Fln protein: PDGYPSSDGIINGGTYAHSAFFSETRAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGxxLNVDINEFQTNLVPFPRIHFMLSSYAPVVAKEKAYHEALSVKEITNSVFEASNMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVSxxxxKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLCKVPRAVCMISNNTAVAEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYYEVAADDLDNEEVDEDEVY*

Protein Length: 423

Fln nts: CCAGATGGTTATCCCTCTAGTGATGGAATAATAAATGGAGGAACCTACGCACACAGTGCCTTCTTCAGTGAAACCAGAGCTGGGAAGCATGTTCCCAGAGCTCTGTTTATTGATCTTGAACCAACAGTTATTGATGAGGTTAGGACAGGTCCATACAGGCAGCTTTTTCACCCTGAACAACTTATTTCTGGCAAGGAAGATGCAGCTAACAACTTTGCTCGAGGCCATTATACTGTGGGCAAAGATGTATTGGAGAATTGTCTAGACAGAATAAGGAAGCTCTGTGATAATTGCACCAGTTTGCAAGGATTTTTAGTTTTTAATGCAGTTGGAGGAGGTACTGGATCTGGTTTGGGATCCTTACTCTTGGAACGCCTTTCTGTTGAATATGGAAGAAAACCGAAGTTGGGATTTAATATATATCCCTCTCCTCAGGTTTCCACTGCAGTTGTAGAACCATATAACAGTGTATTGTCAACTCATTCTCTCTTGGAGCACACAGATGTAGCAGTTGTTCTGGACAACGAAGCTATTTATGACATATGTAAACGATGTCTAGACATCGAAAGACCTACATACAAAAACTTGAACAGATTGATCTCGCAAGTTATATCGTCATTAACAAGTTCTCTGCGATTTCAAGGTxxxxxxTTAAATGTAGACATAAATGAGTTTCAAACGAACCTTGTTCCCTTTCCTAGAATTCATTTCATGCTTTCATCTTATGCACCAGTAGTGGCTAAAGAGAAAGCCTATCATGAAGCATTGTCAGTGAAAGAAATAACAAATTCTGTGTTTGAGGCCAGTAACATGATGACTAAATGTGATCCCAGACACGGAAAATACATGGCCTGCTGTCTAATGTATAGAGGAGACGTGGTGCCCAAAGATGTGAATGCAGCAGTTTCAATxxxxxxxxxAAAACGAGCTGTACAATTCGTAGACTGGTGTCCGACAGGTTTCAAATGTGGAATAAACTATCAACCTCCCACAGTTGTGCCCGGAGGAGACTTATGTAAAGTCCCAAGAGCAGTGTGCATGATCAGCAACAACACAGCAGTTGCAGAGGTGTTCTCCCGTCTTGACCACAAATTCGATCTAATGTTTGCAAAGCGTGCATTTGTACACTGGTATGTTGGTGAAGGCATGGAAGAAGGTGAATTCTCAGAGGCCCGGGAAGACTTGGCTGCTCTTGAAAAAGACTACTACGAAGTGGCTGCAGATGATCTAGACAATGAAGAGGTGGATGAAGATGAAGTTTATTGAAGACCTTTCCAATATCTCGTTCTTTCTTTCCTCCAGT

Fln Alignment:

Contig11784___PDGYPSSDGIINGGTYAHSAFFSETRAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVXXXXXXXXXXXXXXXXSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGxLNVDINEFQTNLVPFPRIHFMLSSYAPVVAKEKAYHEALSVKEITNSVFEASNMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIxTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLCKVPRAVCMISNNTAVAEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY
C0PT17__________________PDGYPSSDGIINGGTYAHSAFFSETGAGKHVPRALFIDLEPTVIDEVRTGPYRQLFHPEQLISGKEDAANNFARGHYTVGKDVLENCLDRIRKLCDNCTSLQGFLVFNAVGGGTGSGLGSLLLERLSVEYGRKPKLGFNIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVVLDNEAIYDICKRCLDIERPTYKNLNRLISQVISSLTSSLRFQGxLNVDINEFQTNLVPFPRIHFMLSSYAPVVSKEKAYHEALSVKEITNSVFEASNMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVSMIxTKRAVQFVDWCPTGFKCGINYQPPAVVPGGDLCKVPRAVCMISNNTAVVEVFSRLDHKFDLMFAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
188	75			25	0.996473
191		75		25	0.996473
221		66		33	0.997452
224			66	33	0.997452
289		66	33		0.997452
290	66	33			0.997452
487		25		75	0.996473
497	75		25		0.996473
506	75		25		0.996473
858			66	33	0.997452
892	66			33	0.997452
899	66		33		0.997452
903		66		33	0.997452
911			33	66	0.997452
924	66		33		0.997452
978			33	66	0.997452
1041	33			66	0.997452
1045	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain