SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11685

Length: 1174 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11685

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14425	29/29

Source	Descriptions	Term	Type	Identity
AutoFact	translation initiation factor eIF-3 subunit 3 [Arabidopsis thaliana] sp\|Q9C5Z2.2\|EIF3H_ARATH RecName: Full=Eukaryotic translation initiation factor 3 subunit H; Short=eIF3h; AltName: Full=Eukaryotic translation initiation factor 3 subunit 3; AltName: Full	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	88%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	88%
Blast2go	eukaryotic translation initiation factor 3 complex	GO:0005852	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	JAB1/Mov34/MPN/PAD-1	IPR000555	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXP5

Fln msg: your sequence is shorter than subject: 280 - 339

Fln protein: CITNCFPFPSRGAEEEDEADADGANYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSVLVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFQYYYRNLSRQQSQQQAWLQKRRADNMARKAAGEEPLPEEDSSNPLFKPIIEPSRLESYLITNQVANYCDQIKGFSGQSFSKLYLMEGVHKS*

Protein Length: 281

Fln nts: AATGTATCACCAACTGTTTCCCATTCCCGAGCCGGGGAGCGGAAGAGGAAGATGAAGCCGATGCTGATGGGGCAAATTATCAACTTGAAATGATGCGATGCCTGAGAGAAGTGAATGTCGATAACAACACTGTTGGATGGTACCAGTCAACTTTAATGGGTTCCTTTCAAACTGTGGAACTAATTGAGACGTTTATGAATTACCAGGAGAATATCAGAAGATGCGTCTGTATTATTTACGACCCAGAACGTTCAGGACAGGGCGTTTTGGCAATGAAGGCGCTGAAGCTTCAAGACACTTTCATGGATCTCTATAAGAGTAACGATTTCACTGGAGAAAAGTTGAGGGAGAAGAATTTGACGTGGGTGGATATATTTGAGGAGATTCCTGTTAAAATTTCAAACTCTGTACTTGTTAGTTCTATTATGGCTGAGTTGGAAACTGATTCACCTGTTTCTCAGGGTGACTACGACAGGCTGGTTTTGTCCACAAATCCTTTTATGGAAAAAAATCTGGAGTTTTTAATTGATTGCATGGATGATCTTTCCATGGAACAACAGAAGTTCCAATATTATTATCGTAATCTTTCACGACAACAATCTCAGCAGCAGGCTTGGTTGCAAAAAAGAAGAGCAGACAACATGGCACGTAAAGCTGCTGGTGAGGAACCATTACCTGAAGAGGATTCTTCAAACCCTCTCTTCAAGCCAATTATTGAACCCTCTAGACTTGAGAGCTATCTCATCACCAATCAAGTTGCCAACTACTGTGACCAGATAAAGGGGTTTTCTGGACAGAGTTTCAGCAAACTTTATCTGATGGAAGGAGTTCACAAGAGTTGA___ATATCTGATCGCGGCCATTTTGAAATAGCAATGGAGGATTTTTAATTAGTTGTAATTGAAATTGACGAGAGAGCACAAGCTTTTTTAATCTCGCAAATTGAAATTGATGAGAGCACAAGCTTTTTTAATCTCGCAAATTGGAACTCCTACATAAATTATACCGAGATGTGGAGTTAGGGTTCTGGCCAAAGGAGATGCGAGTTAGATACAGTTCACGAGTCCCCAGTTTTGAATTGTGGTTCATAGCAGATAGTTTGTGATTGAATTATTATTGTTTTTAATTACAATGACATTATTTCTTACTCTAGATAGCAGCACTGCAATCATACATT

Fln Alignment:

Contig11685___ITNCFPFPSRXXXXXXXXXXXXXNYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSVLVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFXXXXXXXXXXXXXXXXXXXXXXADNMARKAAGEEPLPEEDSSNPLFKPIIEPSRLESYLITNQVANYCDQIKGFSGQSFSKLYLMEGVHKS
A9NXP5__________________VTNCFPFPSRGTEEEDEADADGANYQLEMMRCLREVNVDNNTVGWYQSTLMGSFQTVELIETFMNYQENIRRCVCIIYDPERSGQGVLAMKALKLQDTFMDLYKSNDFTGEKLREKNLTWVDIFEEIPVKISNSALVSSIMAELETDSPVSQGDYDRLVLSTNPFMEKNLEFLIDCMDDLSMEQQKFQYYYRNLSRQQSQQQAWLQKRRADNMARKAAGEEPLPEEDPSNPVFKPIIEPSRLESYLITNQVSNYCDQIKGFSGQSFSKLYLMEGVHKS

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
210		14	85		0.993533
212	85			14	0.993533
297	12	87			0.992554
298	87			12	0.992554
299		87	12		0.992554
311	12			87	0.992554
312	12	87			0.992554
314	87		12		0.992554
351		14	85		0.993533
353	85			14	0.993533
354			85	14	0.993533
363	16		83		0.994512
374		16		83	0.994512
443		85		14	0.993533
777	16		83		0.994512
890			12	87	0.992554
891	87			12	0.992554
901	25		75		1.0
934	10			90	0.90298
936	10		90		0.90298
937		90		10	0.90298
938	90			10	0.90298
1044	37		62		1.0
1062	12		87		0.992554
1064		87		12	0.992554
1095	66		33		1.0
1096		33	66		1.0
1097	33			33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain