SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11683

Length: 1883 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11683

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16904	64/65

Source	Descriptions	Term	Type	Identity
AutoFact	RuBisCO large subunit-binding protein subunit alpha, chloroplastic n=9 Tax=fabids RepID=RUBA_PEA	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	ru large subunit-binding protein subunit chloroplastic-like	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	89%
Blast2go	chloroplast organization	GO:0009658	Biological Process	89%
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	thylakoid	GO:0009579	Cellular Component	89%
Blast2go	membrane	GO:0016020	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, DHHC-type, palmitoyltransferase	IPR001594	-	-
Sma3	Diguanylate phosphodiesterase, EAL domain	IPR001633	-	-
Sma3	Chaperonin Cpn60	IPR001844	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Chaperonin Cpn60/TCP-1	IPR002423	-	-
Sma3	Ferredoxin thioredoxin reductase beta subunit, domain	IPR004209	-	-
Sma3	Chaperone, tailless complex polypeptide 1	IPR017998	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQV7

Fln msg: your sequence is shorter than subject: 513 - 598

Fln protein: TLGPRGRNVVLDEFGVPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVSSGANPVSLKKGIDKTVQGLVEELKTKSRPVKGREDIKAVASISAGNDDFVGTMIADALDKVGPDGVLSIESSSSFETTVTVEEGMEIDRGYISPQFVTNQEKLLVEFENARVLVTDQKITTIKDIIPVLEKTTQLNVPLLIIAEDISGEALATLVVNKLRGIVKVAAIKAPGFGDRRKALLQDIAIMTGADFLVGDLGIKVEDASVEQLGLARKITVTNSTTTIIADAATKDEVQARIAQLKKELVATDSVYDSEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAIEEGIVPGGGAAYVHLSSDVLKIKESIDDPEECLGADIVQKALLSPAKLIADNAGVEGAVVVEKILSSSWEVGYNAMTDKYENLLSAGVIDPAKVSRCALQNAASVAGMVLTTQAIVVEKSKKLKPAVPPVPGITY*

Protein Length: 514

Fln nts: TTACGTTGGGACCTAGAGGTCGTAATGTTGTGTTAGATGAATTTGGAGTTCCAAAAGTTGTTAATGATGGAGTTACAATTGCTCGTGCTATTGAACTTCCTGATGCAATGGAAAATGCAGGAGCAGCTTTGATCCGGGAGGTTGCAAGTAAGACCAATGATTCAGCAGGTGATGGGACAACTACTGCATCTGTTTTAGCACGGGAAATTATAAAGCTGGGACTTTTGAATGTCAGTTCAGGAGCCAATCCAGTTTCCTTAAAAAAGGGAATTGATAAAACTGTGCAGGGGCTTGTTGAGGAGCTGAAAACAAAGTCCAGACCTGTAAAAGGACGGGAGGATATTAAAGCTGTGGCTTCAATATCGGCTGGAAATGATGATTTCGTAGGAACTATGATTGCTGATGCTTTAGATAAAGTTGGGCCTGATGGTGTTCTCTCTATAGAGTCTTCTTCATCTTTTGAAACTACTGTTACTGTGGAGGAGGGAATGGAGATTGATAGGGGTTATATATCTCCCCAGTTTGTTACAAACCAGGAAAAGTTGCTTGTGGAGTTTGAGAATGCTAGAGTTTTGGTCACTGACCAGAAAATTACAACAATCAAAGATATTATTCCTGTGCTTGAAAAGACCACGCAGTTGAATGTTCCACTGCTTATTATTGCTGAAGATATATCAGGGGAAGCATTGGCTACATTGGTTGTAAATAAGTTGCGTGGAATAGTCAAAGTTGCTGCTATCAAAGCTCCAGGATTTGGTGATAGGAGAAAGGCCCTACTGCAGGATATTGCTATAATGACAGGTGCGGACTTTCTCGTTGGTGATCTTGGTATTAAGGTTGAGGATGCATCTGTTGAGCAGCTTGGTCTTGCAAGGAAGATTACTGTGACCAACAGTACAACCACGATTATTGCTGATGCTGCCACCAAAGATGAAGTTCAAGCGAGGATTGCACAACTTAAAAAGGAACTGGTAGCAACTGACTCTGTCTATGACTCAGAGAAACTATCAGAAAGAATTGCAAAGCTCTCAGGAGGTGTTGCTGTTATTAAGGTTGGAGCAGCCACAGAAGCTGAACTTGAGGACCGAAAACTTAGAATTGAGGATGCAAAGAATGCAACCTTTGCAGCCATTGAGGAAGGTATTGTGCCAGGTGGTGGGGCTGCTTATGTGCACCTGTCCTCTGATGTGCTGAAGATAAAAGAATCTATTGATGATCCAGAGGAATGCCTCGGCGCTGATATTGTACAAAAGGCACTCTTGTCTCCAGCAAAATTGATCGCAGATAACGCTGGTGTTGAAGGTGCTGTTGTTGTGGAGAAAATTTTGTCTTCCAGCTGGGAGGTGGGGTATAATGCTATGACAGATAAATATGAAAATCTTCTCAGTGCTGGTGTCATAGATCCTGCTAAGGTCTCAAGGTGTGCTCTACAGAATGCAGCCTCTGTTGCAGGCATGGTTCTTACAACCCAAGCAATTGTTGTTGAGAAGTCCAAAAAATTGAAGCCCGCGGTTCCCCCTGTTCCTGGGATCACATATTAG___ATCTTTTTCGTGAGTAAAATTGAAAGCTAGATATTTAAATTGTCATTCATCTTGGAGCTCATGTAATGTGTGTTGCCTCGGAGGATAATTGACTGCCTGATGTTGGTAGAGGAATGAATAAAGTAACGTCAGCAGGATACTGGATTTTGTAAGTTTCCTTTCAAACAAAATTCAAGTATGGGGAAACCTCTTAAGCATATATTACTGTTAGCCTTTCTTTTATTTGAAGGATCAGAGCACTCACATTTGTTATAATTGAAATTTGTTCTCTCCACGTATCATATCTCTAGGGACTTGAGAAGCATTGCATGTTGTGAGCTCCAGATTTCCCTACTCGACATT

Fln Alignment:

Contig11683___TLGPRGRNVVLDEFGVPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLNVSSGANPVSLKKGIDKTVQGLVEELKTKSRPVKGREDIKAVASISAGNDDFVGTMIADALDKVGPDGVLSIXXXXXXXXXXXXXXGMEIDRGYISPQFVTNQEKLLVEFENARVLVXXXXXXXXXXXXPVLEKTTQLNVPLLIIAEDISGEALATLVVNKLRGIVKVAAIKAPGFGDRRKALLQDIAIMTGADFLVGDLGIKVEDASVEQLGLARKITVTNSXXXXXXXXXXKDEVQARIAQLKKELVATDSVYDSEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAIEEGIVPGGGAAYVHLSSDVLKIKESIDDPEECLGADIVQKALLSPAKLIADNAGVEGAVVVEKILSSSWEVGYNAMTDKYENLLSAGVIDPAKVSRCALQNAASVAGMVLTTQAIVVEKSKKLKPAVPPVPGIT
B8LQV7__________________TLGPRGRNVVLDEFGMPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTAAVLAREIIKLGLMNVTAGANPVALKKGIDKTVQGLVEELQKKATPVKGRDDIKAVASISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILVTDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLTGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGADFIAGDLGMKVENTEVEQLGTARKITIAKGSTTIISDAASKDEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGATTEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKQTIEDPDERIGADIVQKALVSPAALIANNAGVEGDVVVEKILTSDWEMGYNAMTDTYENLLNSGVIDPSKVARCALQNAASVAGMVLTTQAIVVEKPKKSISAAAPAQGMT

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
111	16		83		0.994512
289	42		57		1.0
290		42	57		1.0
291	42	42	14		1.0
292		14		85	0.993533
306			87	12	0.992554
335	14		85		0.993533
336			85	14	0.993533
337			85	14	0.993533
342		16		83	0.994512
363		20		80	0.995493
366		80		20	0.995493
461	33			66	0.997452
1591	20	80			0.995493
1594			20	80	0.995493
1595		80		20	0.995493
1610	20		80		0.995493
1611		20		80	0.995493
1613	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain