SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11677

Length: 472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene11677
CGGTTTGAGCACAAGGGCTTTACTCTCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCGGTGGTATGTATGGCTTGGGAAGGTCCGGGTATTGTAGCTGCTGCTCGTAAGCTGATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCAGGAAAACGGACAACGTGAAGTAGCTCTATGGTTCAAAGATGGCGAACTTTGTGAATGGACACAGGAGATAAAACCTTGGCTGAGGGAATAGCGTGTTCAAATGAGATATGACTCTCAAAATTTTCCCCAATTCTTACAACAGTGTATGCTTTTTTGGTATGGTATACGCATTTTCCTACATT

Ace file of the UniGene biog3_v1.0_unigene11677 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25282	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside diphosphate kinase n=1 Tax=Ricinus communis RepID=B9RAM1_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	nucleoside diphosphate kinase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	85%
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	85%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	85%
Blast2go	nucleoside diphosphate phosphorylation	GO:0006165	Biological Process	85%
Blast2go	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	85%
Blast2go	identical protein binding	GO:0042802	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	thylakoid	GO:0009579	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEB8

Fln msg: your sequence is shorter than subject: 127 - 268

Fln protein: RFEHKGFTLKGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPVVCMAWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEIKPWLRE*

Protein Length: 128

Fln nts: CGGTTTGAGCACAAGGGCTTTACTCTCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCGGTGGTATGTATGGCTTGGGAAGGTCCGGGTATTGTAGCTGCTGCTCGTAAGCTGATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCAGGAAAACGGACAACGTGAAGTAGCTCTATGGTTCAAAGATGGCGAACTTTGTGAATGGACACAGGAGATAAAACCTTGGCTGAGGGAATAG___CGTGTTCAAATGAGATATGACTCTCAAAATTTTCCCCAATTCTTACAACAGTGTATGCTTTTTTGGTATGGTATACGCATTTTCCTACATT

Fln Alignment:

Contig11677___RFEHKGFTLKGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPVVCMAWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEIKPWLRE
D5AEB8__________________RFEHKGFTLKGLKLFQCPTELAEEHYRDLKSKSFFPKLVKYITSGPVVCMAWEGPGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEITPWLRE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
76	33			66	0.997452
79		66	33		0.997452
112			33	66	1.0
282		58	41		1.0
376	12		87		0.992554
377		12	87		0.992554
378	12	87			0.992554
382	28		71		1.0
418	25			75	0.996473
419		25		75	0.996473
420	75		25		0.996473
421			75	25	0.996473
422			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain