SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11617

Length: 1505 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11617 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25617	37/40
SustainPine v2.0	sp_v2.0_unigene35140	2/40

Source	Descriptions	Term	Type	Identity
AutoFact	Male-specific transcription factor M88B7.2 n=1 Tax=Marchantia polymorpha RepID=Q6J3Q5_MARPO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC32

Fln msg:

Fln protein: MSDTDNLDPESRVIHNNHQHHSFYPDRQAPIHAVNAHAHVAAHHAPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSNDNGAGEEQDEGDGDNNCMEEADVQSDGDNLAEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAEGWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSSTSLGSQEQSQSSHEQNDGGPGSQETELGE*

Protein Length: 352

Fln nts: AATGTAATGCATAAATTTAAAGATATTTGTGAACTACCACAGCCACTATTTTGAAATTAACTTGTACACTGCATTTTCTCTGGAAGCTATGACTTGCACCTTCAGCCGCCATTAACAGATTCAACTTACTAGATTATTCTAGCTGAACTGTGCATAGCTATGCGAGAAAC_-_ATGTCGGATACAGACAATCTTGATCCAGAGTCTCGAGTTATTCATAACAACCACCAGCATCATAGTTTCTATCCTGATCGGCAAGCGCCGATCCATGCTGTTAATGCACATGCTCATGTAGCTGCACACCATGCCCCTATGCATGGGATACTGATGCAAGGCCAAAATGAGGGAGATCCTCACAGACATCAAGGAGCCCAATTTCAAGGAGTAGATAGTGGGCATATGCATATACATTACATGCACAGTGATGAGCATGGACATCCATTGCACCATAGCAATGACAATGGTGCTGGAGAAGAACAGGATGAAGGAGATGGAGACAATAATTGCATGGAGGAAGCAGATGTTCAATCAGATGGCGACAATCTCGCAGAACCCCAGTCGGTTGTCCCTGTACGCAGTCAGGGAACAAATCAACTTACACTCTCATATCAAGGCGAGGTCTATGTCTTTGATATGGTGGCACCAGAGAAGGTACAGCAAGTGCTTTTATTGTTGGGGGGTCGGGAAATACCAAATAGCATGGCTGGCATGCCCATTGCCACTCTTCATCATCAGAAGGGCTTGTCAGATGTTTCACATCGTTTAAATCAACCACAAAGACTTGCATCTCTTACAAGATTTCGAGAAAAGCGTAAGGAACGTTGTTTTGATAAAAAGATCCGTTACACTGTACGCAAAGAGGTTGCTCAAAGGATGCAACGCAACAAAGGTCAATTTACATCATACAAGTCTGATTCTAAGGATTTAGTCTCTGCTGGACATAAGTGGGATTCAGCTGAGGGTTGGGCTCCAAACACTAATGGGACACAACAAGAAGCTGTATGCCTTCATTGTGGCACTGGGGAGAGATCTACTCCAATGATGCGGCGTGGGCCAGTTGGACCAAGGACACTTTGCAATGCCTGTGGACTAGTGTGGGCCAACAAGGGAGTGCTGAGGGACCTTTCAAAAAGTTCCACATCTTTGGGAAGCCAGGAGCAATCGCAGAGCTCACATGAACAGAATGATGGGGGACCAGGAAGCCAGGAGACTGAGCTGGGTGAATAA___TTGAGTTACATTTCCTCCACCTTTTGTCCATAGTCTGTCATGACATACATGACAGAATCGCTTCTCTGTCGGTTCTGTTCTTATAGAAAATTGAAGAAGCACTTTAATACACTTCTGTTCATAAGGTGCTGCTTTAAAATTTTCCAGCAAGTGCTGGTGATGATCTTCTGACATCGGTTATTCTGTACAACTATTTTGTATACAGTAGAATAATTATTCAGTCAGAAAGAGAGCATATCATATATGGGAAAAAATATAATTATTTTATAAGCTTCCAACATT

Fln Alignment:

Contig11617___MSDTDNLDPESRVIHNNHQHHSFYPDRQAPIXXXXXXXXXXXXXAPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSXXXXXXXXXXXXXXXXNCMEEADVQSDGDNLAEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAE-GWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLXXXXXXXXXXXXXXXSHEQNDGGPGSQETELGE
D5AC32__________________MSDTDNLDPESRVIHNHHQHHSFYPDRQAPIHAVNAHAHVAAHHVPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSNDNGAGEEQDEGDGDNNCMEEADVQSDGDNLGEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIASLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKADSKDLISAGHKWDPSEGGWTPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSTTSLGSQEQSQSSHEQNDGGPGSQETERGE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
298	33		33	33	0.997753
299	33	33	33		0.997753
301		66	33		0.997452
302	66			33	0.997452
391			85	14	0.993533
429	11	88			0.923564
431			88	11	0.923564
433		88		11	0.923564
459			77	22	0.999999
465		85		14	0.993533
466			85	14	0.993533
508			85	14	0.993533
510		85		14	0.993533
611	20			80	0.995493
612	14	14	71		0.984337
625	14	85			0.993533
629	12		87		0.992554
630	12			87	0.992554
633		87		12	0.992554
706	11			88	0.923564
707	11			88	0.923564
709		88	11		0.923564
969	33		66		0.997452
1380	33			66	0.997452
1384			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain