SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11611

Length: 650 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11611 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15829	31/33
SustainPine v2.0	sp_v2.0_unigene16064	1/33

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline-rich protein n=1 Tax=Pinus taeda RepID=Q9LLZ6_PINTA	-	-	2.0e-24	67%
FL-Next	tr=Proline-rich protein; Pinus taeda (Loblolly pine).	-	-	0.0	79%
Blast2go	proline rich protein	-	-	1.12188e-28	86%

Source	InterPros	Term	Type	Identity
Sma3		IPR003267	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
624	83			16	0.999991
633	10			90	0.90298
636			90	10	0.90298
637	12		87		0.992554
638	12	12	75		0.975346
639	12	12	75		0.975346
640	88			11	0.991528
641		12		87	0.992554
642	85			14	0.993533
643	16		66	16	0.988813
644		14		85	0.993533
646			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain