SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11605

Length: 1168 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11605 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8206	35/35

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat-containing protein [Arabidopsis thaliana] gb\|AAN13089.1\| unknown protein [Arabidopsis thaliana] gb\|AEE29355.1\| leucine-rich repeat-containing protein [Arabidopsis thaliana]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	insulin-like growth factor-binding protein complex acid labile subunit-like	-	-	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal	IPR011629	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A998

Fln msg: STOP codon was not found. Distance to subject end: 85 aas, W2: There is no M at the beginning, your sequence is longer than subject: 389 - 335

Fln protein: LGEYPGVEDSWLEILATQGLSLLAVDISSSDVTDSGLSLLQKCLNLQHLNFNYCQRISDAGLEYLTGLTNLTSLSFKKSNAITASGLRALAGLVNLTSLDLEMCSGIHGGLVHLKGLTKLEALNIGWCNCIKNSDIKPLAGLTNLKELQISRSKVTDSGIAFLKGLKKLSLLNMDGCPVTVACMDTISGLDALTYLNIKSCCITDAGCQKLEGLSNLKTLNMAYNNITHAGLVHLKGLTNLENLNLDSCRVGDEGMECLRGLTSLKNLDLSDSEVGSNGLQHLAGLRNLESLNLSFTQVTDIGLRKLSGLTALKSLNLDTRQVTDGGLSALTSLTGLTHLDLFGARITDYGTNCLRYFKKLQSLELCGGSITDAGVKNIKDLTLMTSLH

Protein Length: 390

Fln nts: CTGGGAGAATACCCTGGTGTGGAAGATAGTTGGCTTGAAATTCTTGCAACGCAGGGACTGTCCCTCCTGGCAGTTGATATTTCTAGTTCAGACGTGACAGATTCAGGGCTTTCATTATTGCAAAAGTGTCTAAATTTGCAGCATCTAAATTTTAACTATTGTCAACGTATTTCTGATGCTGGACTAGAATATCTCACAGGACTTACAAACTTGACTTCACTTAGTTTTAAAAAGAGCAATGCAATAACTGCATCAGGCTTGCGTGCCTTAGCTGGTCTTGTGAACTTGACAAGTCTGGATCTGGAGATGTGCTCAGGGATTCATGGTGGATTGGTGCATCTAAAAGGACTTACAAAATTAGAAGCATTGAACATCGGATGGTGCAATTGTATAAAGAACTCAGATATCAAGCCTCTGGCTGGGCTTACAAACTTGAAGGAGCTGCAAATTTCTCGAAGTAAAGTCACTGATTCAGGCATTGCTTTTTTGAAAGGCCTGAAAAAACTTTCTTTACTCAACATGGATGGCTGTCCGGTGACTGTGGCATGCATGGATACAATTTCAGGTCTTGATGCTTTGACATATCTCAACATAAAGTCATGCTGTATAACTGATGCTGGATGCCAAAAGCTTGAAGGACTTTCAAATTTAAAGACTCTGAACATGGCCTATAACAATATTACACATGCTGGCCTAGTACATCTTAAAGGCTTGACAAACTTGGAGAACTTAAATTTGGATTCGTGTAGAGTTGGAGACGAGGGAATGGAATGTTTGAGAGGGCTTACTTCTCTGAAGAACTTGGATTTGTCAGACTCTGAAGTAGGCAGCAATGGACTCCAGCATTTGGCAGGGTTACGGAATTTGGAAAGTTTGAACCTGTCATTCACCCAAGTAACTGATATTGGCTTGCGAAAGCTATCTGGGTTGACAGCGCTTAAATCTCTGAATCTGGATACACGACAAGTTACAGACGGTGGATTGTCTGCTCTTACAAGTCTGACTGGCTTGACACATCTGGATCTTTTTGGAGCCCGTATTACAGATTATGGCACAAACTGTTTAAGATACTTCAAGAAGCTCCAGTCATTAGAGCTATGTGGTGGAAGTATTACAGATGCAGGAGTCAAGAATATCAAAGACCTCACTTTGATGACATCATTACATT

Fln Alignment:

Contig11605___VEDSWLEILATQGLSLLAVDISSS-DVTDSGLSLLQKCLN-LQHLNFNYCQRISDAGLEYL-TGLTNLTSLSFKKSNAITASGLRALA-GLVNLTSLDLEMCSGIHGGLVHLKGLTKLEALNIGWCNCIKNSDIKPL-AGLTNLKELQISRS---------------------------KVTDSGIAFLKGLKKLSLLNMDGCP-VTVACMDTIS-GLDALTYLNIKSCC-ITDAGCQKL-EGLSNLKTLNMAYNNITHAGLVHLKGLTNLENLNL
D5A998__________________ISSTALESIGKSCKSLREISLSKCIGVTDDGISAIAACCTELNKLDLTCCRDLTDIAIKAVATSCRYLSSFMMESCGLVTERSLTMLGEGCPFLQELDLTDCRINNTGLKSISRCSELITLNLGFCLNISAEGIYHIGACCSNLQELNLYRSVGTGDAGLEAIANGCPRLKSINISYCINVTDNSMKSISRLQKLHNLEIRGCPGISSAGLSAIALGCKRIVALDVKGCYNIDDAGILAIADSCQNLRQINVSYCPISDVGLSTLARLSCLQNMKL

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
617	11	88			0.923564
621			88	11	0.923564
770	14		7	7	0.999974
771	7	15	76		0.999983
773			76	23	1.0
775	18			81	0.999994
777	18			81	0.999994
820	12			87	0.992554
821	87	12			0.992554
823			87	12	0.992554
941	50			50	1.0
942	50			50	1.0
944	50		50		1.0
945	50			50	1.0
1155		75		25	0.996473
1156		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain