SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11553

Length: 1664 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11553 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6370	63/63

Source	Descriptions	Term	Type	Identity
AutoFact	NADH-ubiquinone oxidoreductase 75 kDa subunit n=1 Tax=Picea sitchensis RepID=B8LMM8_PICSI	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nadh-ubiquinone oxidoreductase subunit	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	NADH dehydrogenase (ubiquinone).	EC:1.6.5.3	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Oxidative phosphorylation	00190		0.0	84%
Blast2go	Metabolic pathways	01100		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	84%
Blast2go	transport	GO:0006810	Biological Process	84%
Blast2go	ATP synthesis coupled electron transport	GO:0042773	Biological Process	84%
Blast2go	photorespiration	GO:0009853	Biological Process	84%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	84%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	84%
Blast2go	NADH dehydrogenase (ubiquinone) activity	GO:0008137	Molecular Function	84%
Blast2go	metal ion binding	GO:0046872	Molecular Function	84%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	84%
Blast2go	4 iron, 4 sulfur cluster binding	GO:0051539	Molecular Function	84%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	2Fe-2S ferredoxin-type domain	IPR001041	-	-
Sma3	Molybdopterin oxidoreductase	IPR006656	-	-
Sma3	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	IPR000283	-	-
Sma3	NADH:ubiquinone oxidoreductase, subunit G	IPR010228	-	-
Sma3	NADH-quinone oxidoreductase, chain G, C-terminal	IPR015405	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMM8

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 554 - 750

Fln protein: MSKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGMLGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVSDAVGSNIRIDSRGPEVMRVLPRLNEDINEEWISDKTRFSYDGLKRQRLNEPMMRRPDGRLQPVTWHDALEVIAEVTQQVKPEEMVAIAGKLSDVESIMALKDYMNRMGSENIWCEGNGMNPQADLRSEYLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPTDLAYEHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVLIVGAGIFERKDKDAIMAAVDIIVKYAKVIRNEWNGFNVLLLNAAQAGGLDLGFIPGSGSKIGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQKH

Protein Length: 555

Fln nts: AATGTCAAAAAGATCCGTGGTGGATAAGAATCTCGGTCCTCTCGTCAAGACTGTCATGACCAGGTGTATTCAGTGTACAAGGTGTGTTAGATTTGCTTCTGAAGTTGCTGGAGTACAGGACCTTGGCATGTTGGGACGTGGAAGTGGTGAAGAAATTGGCACGTATGTGGAAAGATTGATGACGAGTGAACTTTCAGGGAATGTGATAGATATCTGTCCTGTTGGAGCCCTTACATCTAAACCATTTGCATTCAAAGCAAGAAACTGGGAACTAAAGGGCACAGAGACCATTGATGTTTCTGATGCAGTTGGATCCAATATTAGAATTGATAGTCGAGGTCCAGAAGTGATGCGGGTTCTTCCTCGCCTAAATGAGGACATAAATGAAGAGTGGATATCAGACAAGACGCGGTTTTCTTATGATGGTCTTAAGCGACAAAGGCTAAATGAGCCAATGATGCGCCGACCTGATGGTCGTCTTCAACCTGTGACCTGGCACGATGCTCTTGAGGTTATTGCAGAGGTTACCCAGCAAGTAAAGCCAGAAGAAATGGTTGCAATTGCTGGGAAACTCTCTGATGTTGAATCCATAATGGCTTTGAAAGATTATATGAACAGAATGGGGTCTGAGAACATATGGTGTGAAGGGAATGGCATGAATCCTCAGGCTGATCTGCGGTCTGAATATCTCTTGAATACAAGCATTGCGGGCCTGGAGAAGGGAGATGCTTTTCTCTTTGTTGGTACAAATCCAAGAGTTGAAGCACCAATGGTGAATGCAAGGATAAGGAAAGCTGTAAGAGCAGGACATGCAAAAGTTGCTTCTGTTGGCCCTCCTACGGACTTAGCTTATGAACATCAGCATTTAGGCATTGGACCAGAGACACTTATTCAGATAGCTGAAGGCAGGCATCCGTTTTGTTCAACTCTGGCTTCTGCAAAATATCCTGTGCTAATTGTTGGGGCTGGTATTTTCGAACGGAAAGATAAAGATGCTATTATGGCTGCAGTTGATATTATTGTCAAGTATGCCAAAGTTATTAGGAATGAATGGAATGGTTTCAATGTCCTTTTACTGAATGCTGCTCAAGCTGGGGGCCTAGATCTCGGTTTTATCCCTGGTTCTGGTTCAAAGATTGGCATTGAAAATGCAAAATTTGTTTACTTGCTAGGAGCAGATGACATTCAGGTTGACAAAATCTCCAAGGATGCATTTGTAGTTTATCAAGGGCACCATGGTGATCGAAGTGTTTACAGGGCTAATATGATTTTACCAGGGGTGGCTTTTTCTGAGAAGGAAGGAACATATGAAAATGCAGAAGGTTGTACTCAGCAGACCATCCCTGCAGTTCCCACAGTTGGTGATTCTAGGGATGACTGGAAAATTCTTAGAGCTTTATCTGAAGTTTCTGGAGTAAAACTCCCATATGATACAGTAAATGCACTTCGTACTCGCATTCGAGCTGTGTCCCCAAATTTGTTTCGAGTTGATGAGAGGGAACCTGCATCAGCATGGCTTCGAGAACTGAAGCCTGAATTCAACTCAAAAATGAGTCGAAGACCTTTTACCAATGCTATTGATAACTTCTACATGACTGATTCTATCTGTCGGGCCTCAAAAACAATGGCTCAGTGCACTGCCACATTACTCAGCCAGAAACATT

Fln Alignment:

Contig11553___SKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGMLGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVSDAVGSNIRIDSRGPEVMRVLPRLNEDINEEWISDKTRFSYDGLKRQRLNEPMMRRPDGRLQPVTWHDALEVIAEVTQQVKPEEMVAIAGKLSDVESIMALKDYMNRMGSENIWCEGNGMNPQADLRSEYLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPTDLAYEHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVLIVGAGIFERKDKDAIMAAVDIIVKYAKVIRNEWNGFNVLLLNAAQAGGLDLGFIPGSGSKIGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENAEGCTQQTIPAVPTVGDSRDDWKILRALSEVSGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWLRELKPEFNSKMSRRPFTNAIDNFYMTDSICRASKTMAQCTATLLSQK
B8LMM8__________________TKRSVVDKNLGPLVKTVMTRCIQCTRCVRFASEVAGVQDLGILGRGSGEEIGTYVERLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTESIDVTDAVGSNIKIDSRGPEVMRILPRLNEDINEEWISDKTRFCYDGLKRQRLNEPMIRRPDGRLQPVTWHDALEVIAEVTHQVKPEEMVAIAGKLSDVESMMALKDYMNKMGSENIWCEGDGMDPQADLRSDFLLNTSIAGLEKGDAFLFVGTNPRVEAPMVNARIRKAVRAGHAKVASVGPPMDLAYDHQHLGIGPETLIQIAEGRHPFCSTLASAKYPVIIVGAGIFERKDKDAVMAAVDIIAKHAKVIRNEWNGFNVLLLNAAQAGGLDLGLIPGSGSKNGIENAKFVYLLGADDIQVDKISKDAFVVYQGHHGDRSVYRANMILPGVAFSEKEGTYENTEGCTQQTIPAVPTVGDSRDDWKILRALSEISGVKLPYDTVNALRTRIRAVSPNLFRVDEREPASAWIRELKPEFNSKMSPRPFNKAIDNFYMTDSICRASKTMAQCTAALLSEK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
823	11	88			0.923564
825	11		88		0.923564
827	88			11	0.923564
925		87		12	0.992554
926	87		12		0.992554
927	87			12	0.992554
973	88			11	0.923564
974			88	11	0.923564
1255	22		77		0.999999
1257	18		81		0.999994
1263	10			90	0.90298
1264	10	90			0.90298
1298	28		71		1.0
1302			71	28	1.0
1303			71	28	1.0
1380	10			90	0.90298
1381	10	90			0.90298
1416			88	11	0.923564
1453		25		75	1.0
1539	16	83			0.994512
1542	83			16	0.994512
1543			83	16	0.994512
1584	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain