SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11525

Length: 1605 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11525 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17843	58/79
SustainPine v2.0	sp_v2.0_unigene25816	21/79

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Catharanthus roseus RepID=O81955_CATRO	-	-	90%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	serine threonine-protein phosphatase pp1-like	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg:

Fln protein: MDPAVLDDIINRLLEVRGSRPGKQVQLSEAEIRHLCLTSKEIFMGQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPQANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLTHLDQIRNLPRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGPDKVSEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKPKFGYGNSTAATAKPGTPPRGMRSFLGTKG*

Protein Length: 331

Fln nts: CACAATATTTCCCTCCTCCCATCCACAATCTTCTCTCGGCCTCCTCTCTGCAAATCCTCTCTGCGATAAACCCGAGCGCTGTTTAAACTCCTGCAGGGTCACTGATATTCTCACCCTACCGAGGGTTAGTTGACCTAACCCAACCCCGCTAGCGCCTCGTCTCATCTCGATCGGCGGTCTCAGAGGAGGAGGCGGGGAAGGGTGGTTACAGTTGTAGCAGTAGGAATGTAAAGCTGGTTGCCTGAGAAATACCCATCTTTATCCGTCTGTTGTCTCGGGCAAGGTGTGGATCCATATAGGTAGGTTTGGACCAGGGAAGGGCAGGGGTGATTTC_-_ATGGACCCTGCCGTCTTAGACGATATAATAAACCGGTTGCTGGAGGTCAGAGGTTCGAGGCCCGGCAAGCAGGTCCAGCTCTCCGAGGCAGAGATCCGGCACCTTTGTCTTACATCCAAAGAGATTTTTATGGGCCAGCCCAACTTGTTGGAGCTCGAGGCGCCAATTAAGATTTGTGGTGATATTCATGGCCAGTATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGTTTACCACCACAAGCCAATTACTTATTCTTAGGAGATTATGTGGATCGAGGCAAGCAAAGTCTAGAGACGATATGCCTTCTCCTAGCTTACAAAATAAAATACCCAGAGAACTTTTTCCTTTTGAGAGGCAATCATGAATGTGCCTCAATCAATCGGATATATGGGTTCTATGATGAGTGTAAACGCAGATTCAATATTAGATTATGGAAAGTTTTTACTGATTGTTTCAACTGTCTACCGGTGGCTGCTCTGATAGATGAGAAGATACTATGCATGCATGGAGGCCTTTCACCTGATCTAACCCACTTGGATCAAATCAGGAACCTACCTCGTCCAACAGATGTTCCAGATACAGGGTTGCTATGTGATCTTCTTTGGTCAGATCCTAGCAAAGATGTTCAAGGATGGGGGATGAATGACCGAGGGGTGTCCTACACTTTTGGCCCTGACAAAGTGTCTGAGTTTCTCCAAAAGCACGACCTAGATCTTATCTGTCGTGCACATCAGGTTGTGGAAGATGGATATGAATTTTTTGCTGACAGACAGCTTGTTACAATCTTCTCAGCACCAAATTACTGTGGTGAATTTGATAATGCGGGTGCAATGATGAGTGTAGATGAAACACTAATGTGCTCTTTCCAGATTCTTAAACCAGCAGAGAAGAAACCCAAGTTTGGTTATGGCAACTCAACTGCTGCCACAGCTAAACCTGGAACACCTCCCCGTGGAATGAGGTCTTTCCTGGGGACCAAAGGATAG___CTTGTACAGGTTGCAGTAGGTCAAAGTTCTATGAAATTATCTTGGCTAAGCAAGAGAGGTGCCAGTGGCATTAGTTACAACTTTGCAACAGATTATATTAATTCATGCCCATATATTGGGTATAGAGCTTTAATAGCTTCTGAAGGTGATGCTTTTTGGAAGTTCCTTCTAGGGGCAAATATATATTGATCATTGAATGTGCAAAGAAAAGCATACAAGCTATAAAAAGCTCTGGAGATTTTAGAACGATTGCATACAAGTTCATAAAGTGTTTTGACATT

Fln Alignment:

Contig11525___MDPAVLDDIINRLLEVRGSRPGKQVQLSEAEIRHLCLTSKEIFMGQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPQANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNIRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLTHLDQIRNLPRPTDVPDTGLLCDLLWSDPSKDVQGWGMNDRGVSYTFGPDKVSEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPAEKKPKFGYGNSTAATAKPGTPPRGMR
C0PPR8__________________METEVLDDVIGRLLEVRGSKPGKQVQLLEAEVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELNSLDQIRNIPRPTDVPDQGLLCDLLWSDPSNEIQGWGSNDRGVSYTFGPDKVSDFLQKLDLDLICRAHQVVEDGYQFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQSLMCSFQILKPAEKKPRTVY----AETQRAGTPPRGNR

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
131	10	90			0.90298
134		90		10	0.90298
587	14	85			0.993533
589			14	85	0.993533
648	11			88	0.923564
649	11			88	0.923564
845		15		84	0.999986
912	10		90		0.90298
914	10	90			0.90298
915	10			90	0.90298
918		87		12	0.992554
1109	12		87		0.992554
1112	12	87			0.992554
1113		87		12	0.992554
1397	16		83		0.994512
1398		16		83	0.994512
1400	83			16	0.994512
1401		83		16	0.994512
1422	14			85	0.993533
1425			85	14	0.993533
1482	20	80			0.995493
1483		80		20	0.995493
1501	25			75	0.996473
1504			75	25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain