SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11493

Length: 1259 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11493 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25639	92/117
SustainPine v2.0	sp_v2.0_unigene60421	20/117
SustainPine v2.0	sp_v2.0_unigene65745	1/117

Source	Descriptions	Term	Type	Identity
AutoFact	Lhcb5 protein n=6 Tax=Pinaceae RepID=Q41040_PINSY	-	-	80%
FL-Next	tr=Lhcb5 protein; Pinus sylvestris (Scots pine).	-	-	98%
Blast2go	chlorophyll a-b binding protein chloroplastic-like	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to blue light	GO:0009637	Biological Process	94%
Blast2go	nonphotochemical quenching	GO:0010196	Biological Process	94%
Blast2go	response to far red light	GO:0010218	Biological Process	94%
Blast2go	response to red light	GO:0010114	Biological Process	94%
Blast2go	photosynthesis	GO:0015979	Biological Process	94%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	94%
Blast2go	plastoglobule	GO:0010287	Cellular Component	94%
Blast2go	PSII associated light-harvesting complex II	GO:0009517	Cellular Component	94%
Blast2go	photosystem II antenna complex	GO:0009783	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41040

Fln msg:

Fln protein: MASMAALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPSLQVVSLFGFKKKAAPPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLSRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLDFDDKLHPGGPFDPLGLAKDPDQFAILKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL*

Protein Length: 304

Fln nts: CGGTCTCCCTCTTCATGAGCGTGGAAGTATTTGGCGAGAGGCCGGCTCAGTTGGGATTGCATTGAATTTTGGAAAGAATTGGAGCAGCGCG_-_ATGGCTTCCATGGCTGCACTGGGTTCCACTGCAGCTCTAGGAAGAGCAGATCAAATACTTTGGAATCCATTGAATCTGAACAAGCTTGCAGCATCAACCGCTGCATCCAGATCATCCACAAGGCCAACTTCTCCTTCCCTGCAGGTTGTTTCTCTCTTTGGCTTTAAAAAGAAAGCAGCACCCCCGCCTCCTCCTCCCAAATCCAAAGCCAAGGCAGCAGCTGCCCCTGCAACCGAAGAGCTTGCAAAGTGGTATGGTCCAGACAGGAGGATCTTTCTCCCAGAAGGTCTACTTGACAGGGATGACATACCTGAGTACCTCAATGGTGAGGTCCCTGGAGATTATGGATATGATCCGTTTGGACTTAGTAGGAAACCAGAAAACTTTGACAAGTACCAAGCATATGAACTCATTCATGCAAGATGGGCAATGCTGGGAGCTGCAGGGTTCATTATCCCAGAGGCCTTTAACAAATTCGGTGCCTACTGCGGTCCTGAAGCTGTTTGGTTTAAGACGGGTGCTCTTCTTCTTGATGGAGGTACGCTATCTTACTTCGGTGCCAGCATTCCCATCAATTTGATTGCTGCTGTCGTTGCAGAGGTGGTCCTTGTTGGTGGCGCTGAATACTACAGGGCAACAAATGGGCTGGACTTTGACGACAAGCTTCACCCGGGAGGGCCATTTGATCCATTGGGATTGGCGAAGGACCCAGACCAGTTCGCCATTCTTAAGGTGAAGGAGATTAAAAATGGAAGGTTGGCCATGTTCTCAATGCTCGGCTTCTTCCTTCAAGCTTATGTTACTGGTGAGGGTCCTGTGGAGAATCTGGCTGCCCATTTGAGTGATCCTTTTGGAAACAACATTCTAACCGTCCTCGGAGGTTCCCTTGAGCGGGCACCTACATTGTAG___AATATGAATCTCCATCAGCTTTTCTTCCTTTTAATTTGCTTTGCATTTGGCACTCCTTTTATGTCACTTCTCTCACATGAATTCGGTTTGAGTTCACACAGTTAGAGTTCGATCAAACACTGAAGCTCTCTGTAACTCTCCTTCTTCACACTATCAAGTACCTTGAGAATTTAAGTGGACTTCAATTCTACACTATGTTTATACCCGGTGTGTTCTGAGTTGTATATTTTTAAGTGGAATTCAACTCTACAGTAACATT

Fln Alignment:

Contig11493___RADQILWNPLNLNKLXXXXXXXXXXXXXXXXSLQVVSLFGFXXXXXXXXXXXXXXXXXXXXXATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLSRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIXXXXXXXXXXXXXEYYRATNGLDFDDKLHPGGPFDPLGLAKDPDQFAILKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL
Q41040__________________RADQILWNPLNLNKLAASTAASRSSTRPTSPSLQVVSLFGFKKKAAPPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPTL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
564			84	15	0.999986
568	12	87			0.999964
570		87		12	0.999964
571		87	12		0.999964
762		10	90		0.999898
871	9	90			0.999842
892	13		86		0.999973
1040		15	84		0.999986
1042	84			15	0.999986
1043			84	15	0.999986
1205	90			10	0.90298
1219	14		85		0.993533
1220		14	85		0.993533
1221	16	83			0.994512
1222		83		16	0.994512
1242	33		66		0.997452
1246		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain