SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11482

Length: 1339 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11482

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21440	41/105
SustainPine v2.0	sp_v2.0_unigene23514	1/105
SustainPine v2.0	sp_v2.0_unigene60165	63/105

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type-3 n=2 Tax=Picea RepID=PSB3_PICMA	-	-	98%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	proteasome subunit beta type	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	proteasome complex	GO:0000502	Cellular Component	94%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRN1

Fln msg:

Fln protein: MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVTERTLKGRMD*

Protein Length: 206

Fln nts: AAGCAGTGGTATCTTTAACGCAGAGTACGCGGGGACAGCGAAAGCATTTTACACAGGCCAGAGAGGTCCGAACGAGGGTTTTATTTACCTTCTGAATAGTGCAACACAACAAGACTAACCGATGTCATCTTGTAGCAGAAATTTGCAGTAACAGGCGCAGAAGGACAAGAATAACTTCATTAATATACAAAGAAACGTAGCTGCAGCTTGGGGAGACAGACTCAGTTCTCTACACCCCCTAACATCTGTCTCAGCA_-_ATGTCGATATTTGAATATAATGGAAGTGCTTTGGTGGCTATGGTTGGGAAAAACTGCTTTGCCATTGCCAGTGATCGCCGTTTAGGCGTGCAACTGCAAACAATAGCTACTGATTTTCAGCGCATTTTCAAGATTCATGATAAGCTATACGTGGGTCTTTCTGGATTGGCCACAGATGTGCAGACTTTGTACCAAAGATTTGCTTTTCGCCATAAGCTTTATCAGCTGCGTGAGGAAAGAAATATGAGGCCAGAAACTTTTGCAAGTCTTGTTTCTGCGTTACTTTATGAAAAGAGGTTTGGTCCTTACTTTTGTCAACCAGTGATTGCTGGATTAGGGGAAGATGATAAACCGTTTATCTGCACCATGGATTCGATTGGTGCCAAGGAACTGGCAAAGGATTTTGTTGTAGCTGGTACCGCTGCAGAGTCACTTTATGGTGCATGCGAGTCTATGTACAAGCCAGACATGGAACCGGAAGAGCTATTTGAGACAATTTCCCAGGCTTTATTGTCATCCATTGATCGTGATTGTTTGAGTGGCTGGGGAGGGCATGTTTATGTCGTGTCACCAAATCAAGTGACTGAGCGCACATTGAAGGGGCGCATGGACTGA___GCCTTTTTCTTGCAAGAGAAATTGCAGGTCTTAGCAATGTTATCGGTGGCTATTAAATGAACAGAAATGTGCTTTCATACATAGTGGAGTTAGAGTTGTTGAAATCATTAATACATTTGATGTCATTGCACAAGAAGCCATCTTTCATCACATGCCTCTCAGTTCAATCCTCTAGAGTCCAATGCAAACTGAATCTTTTCTTGCATCTCTAATCAATTTGCAATCAAGTATTTCTATGGACCAAGTTTACAAATTGATACATTTTGAGGGAGCAACATTTTCTGAAATTTTGTACTCTTATGTGAGAGACTGATTTCTTTGCTTGTTATAAATTGGTGATCCTTTTTCATGTATTGACATTCAGAAAGTAGCTACCCAGTCAATAATGCTAGTGCTGGGTGAAATATTACTCATCAAATATTCACATCTGCAAATGAGAACCTTCCGGTGCTGTAACATCTGTGAAGG

Fln Alignment:

Contig11482___MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVTERTLKGRMD
A9NRN1__________________MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
726		18		81	0.999994
727	18		81		0.999994
728			81	18	0.999994
729	81			18	0.999994
731		85		14	0.993533
732		85		14	0.993533
742	16			83	0.994512
777	12			87	0.992554
994	18			81	0.999994
1014	12			87	0.992554
1046		14	85		0.993533
1048			85	14	0.993533
1061	14			85	0.993533
1062		14	85		0.993533
1064	85			14	0.993533
1075	16	83			0.994512
1078		83	16		0.994512
1113	16	83			0.994512
1114	83			16	0.994512
1115	83			16	0.994512
1126			16	83	0.994512
1127			83	16	0.994512
1136	16			83	0.994512
1137		14	85		0.993533
1139			85	14	0.993533
1140			85	14	0.993533
1183	14		85		0.993533
1186			14	85	0.993533
1221	12			87	0.992554
1222		14	85		0.993533
1293	25			75	0.996473
1297		66		33	0.997452
1298	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain