SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11456

Length: 2029 nt

UniGene Fasta

>biog3_v1.0_unigene11456
GCGATTGATTAGCATAGTTTTGTCGAAGTGCAGGGCATAGTCGGTGGAACATATTGTTGCCATTCTGCCTGCTGTTACTAGGGGGCAACTTAACAACTCAGTTGTGATCTTTTTCATTCGAAAAAGAAAATGGTGCTCAGTGCTGCAGTTGAGTCTGAAGACTCAGTCCATTCCTGCATGTTTGCTTCTCGTTATATGCAGTCCTCGTTACCTAAGTTTCGATTGCCAGAAAGATCTATCCCTAAGGATGCTGCCTACCAGATCATTAATGATGAATTGATGTTGGATGGGAATCCCAGATTGAATCTGGCCTCTTTTGTCACTACCTGGATGGAGCCTGAATGTGATAAGCTTATGATGTCTGCTATCAATAAAAATTATGTTGATATGGATGAATACCCTGTCACTACAGATTTACAGAATCGATGTGTGAATATGATAGCTCGGTTGTTCCATGCCGAAGTGGAGGATGGAGATCAGGCTGTTGGCGTTGCAACAGTGGGATCCTCTGAAGCCATCATGCTGGCAGGTCTGGCATTTAAACGCAAATGGCAGAACAAGATGAAGGCACAGGGGAAGCCCTCTGATAAACCCAACATTGTTACTGGTTCCAATGTTCAGGTTTGCTGGGAAAAATTTGCCAGATATTTTGAAGTAGAGTTAAAGGAAGTTAAACTGACGGAAGACTATTATGTAATGAATCCCAAGAAGGCTGTGGAGATGGTGGATGAGAATACCATCTGTGTGTGCGCCATTCTGGGCTCCACTTACAATGGAGAATTTGAAGATGTTAAGATGCTCAATGACTTACTGTTGCAGAAAAATAAACAAACCGGGTGGGATACTCCTATACATGTGGATGCTGCAAGTGGAGGATTCGTTGCACCTTTTATATATCCTGATTTGGAATGGGACTTCAGTTTACCACTAGTGAGAAGCATCAATGTGAGTGGGCACAAATATGGACTTGTATATGCTGGAGTTGGCTGGGTGATTTGGAGAAGCAAGCAAGACTTGCCTGAAGAACTCATTTTCCACATTAATTATTTAGGAACTGATCAGCCCACATTCACTCTGAATTTCTCCAAAGGGGCAAGTCAGATTATTGGGCAGTACTACCAACTCATTCGCCTTGGTTTCGAGGGATACAAATTGATTATGGAAAATTGCAGAGCGAATGCTAGATATCTGACACAAATCCTGGAAAAGACTGGACGTTTCAAAATTCTGTCGAAAGACATGGGCGTGCCTGTGGTTGCATTCTCGCTCAAGGACAAGAGCCTGGGACACGATGAATACGAGATCTCCGATCATTTGCGGAAGTTCGGGTGGGTTGTTCCCGCTTATACAATGGCTCCCGATGCTCAGCATGTCTTGCTGTTACGCGTTGTTGTTAGGGAGGACTTCAGTAGAAGTCTGGCGGAGCGACTGGCTCAGAATATTGAGCAGGTTTTGCAGGAATTAGAAGCTGCTCATCCTCAAACCGCTACAGTAGTGAAGGAGGTCTTGATAACAGAAGATGGGCAGAATGATCAGGTGGGGGCGAAGGAAAATTCTAAAAAGACTCATGACAAGAGAAGACGGGGACGCCATGCTCGCCATCCTGATTCCGTGGACAAAACAAAGGGCATTTGTTAAATCTTCTTATTTCTATGTTGACCGGTCTTTTCGTTCTGGGTTTACTTACTGAAATAAAGTTTCAAGAAATGTGTAAGCAATTTCCTATAATCATCGGAAAAGAGCGTGTAATTTGTGGCGTGACCGAATAATTATGTGTCGAAAACGGGAAGAAGATCAGAAATTGTGTGACTGCGCAAAATTTCTCCACTGGAGAGGTCCCACCAAGATTTGAACCTGGGTTACTGGTTCAGACAACAATGCCCCTTCACTGGACCTTTGGACCTTTATGTTTGGTTTGTTCCAGAAACGCATTAGCTGGATAATTCGCTAAAAAGATATTCAGGAAAATGGAAAATAGTTGTTGAACTTGTAATATTGAAAATATTACTCTTAATCGTTGCCTACCAGA

Ace file of the UniGene biog3_v1.0_unigene11456

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14993	1/191
SustainPine v2.0	sp_v2.0_unigene15908	189/191

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate decarboxylase n=2 Tax=Pinaceae RepID=A0EJ89_PINPS	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	glutamate decarboxylase	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Glutamate decarboxylase	IPR010107	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNM2

Fln msg:

Fln protein: MVLSAAVESEDSVHSCMFASRYMQSSLPKFRLPERSIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMSAINKNYVDMDEYPVTTDLQNRCVNMIARLFHAEVEDGDQAVGVATVGSSEAIMLAGLAFKRKWQNKMKAQGKPSDKPNIVTGSNVQVCWEKFARYFEVELKEVKLTEDYYVMNPKKAVEMVDENTICVCAILGSTYNGEFEDVKMLNDLLLQKNKQTGWDTPIHVDAASGGFVAPFIYPDLEWDFSLPLVRSINVSGHKYGLVYAGVGWVIWRSKQDLPEELIFHINYLGTDQPTFTLNFSKGASQIIGQYYQLIRLGFEGYKLIMENCRANARYLTQILEKTGRFKILSKDMGVPVVAFSLKDKSLGHDEYEISDHLRKFGWVVPAYTMAPDAQHVLLLRVVVREDFSRSLAERLAQNIEQVLQELEAAHPQTATVVKEVLITEDGQNDQVGAKENSKKTHDKRRRGRHARHPDSVDKTKGIC*

Protein Length: 504

Fln nts: GCGATTGATTAGCATAGTTTTGTCGAAGTGCAGGGCATAGTCGGTGGAACATATTGTTGCCATTCTGCCTGCTGTTACTAGGGGGCAACTTAACAACTCAGTTGTGATCTTTTTCATTCGAAAAAGAAA_-_ATGGTGCTCAGTGCTGCAGTTGAGTCTGAAGACTCAGTCCATTCCTGCATGTTTGCTTCTCGTTATATGCAGTCCTCGTTACCTAAGTTTCGATTGCCAGAAAGATCTATCCCTAAGGATGCTGCCTACCAGATCATTAATGATGAATTGATGTTGGATGGGAATCCCAGATTGAATCTGGCCTCTTTTGTCACTACCTGGATGGAGCCTGAATGTGATAAGCTTATGATGTCTGCTATCAATAAAAATTATGTTGATATGGATGAATACCCTGTCACTACAGATTTACAGAATCGATGTGTGAATATGATAGCTCGGTTGTTCCATGCCGAAGTGGAGGATGGAGATCAGGCTGTTGGCGTTGCAACAGTGGGATCCTCTGAAGCCATCATGCTGGCAGGTCTGGCATTTAAACGCAAATGGCAGAACAAGATGAAGGCACAGGGGAAGCCCTCTGATAAACCCAACATTGTTACTGGTTCCAATGTTCAGGTTTGCTGGGAAAAATTTGCCAGATATTTTGAAGTAGAGTTAAAGGAAGTTAAACTGACGGAAGACTATTATGTAATGAATCCCAAGAAGGCTGTGGAGATGGTGGATGAGAATACCATCTGTGTGTGCGCCATTCTGGGCTCCACTTACAATGGAGAATTTGAAGATGTTAAGATGCTCAATGACTTACTGTTGCAGAAAAATAAACAAACCGGGTGGGATACTCCTATACATGTGGATGCTGCAAGTGGAGGATTCGTTGCACCTTTTATATATCCTGATTTGGAATGGGACTTCAGTTTACCACTAGTGAGAAGCATCAATGTGAGTGGGCACAAATATGGACTTGTATATGCTGGAGTTGGCTGGGTGATTTGGAGAAGCAAGCAAGACTTGCCTGAAGAACTCATTTTCCACATTAATTATTTAGGAACTGATCAGCCCACATTCACTCTGAATTTCTCCAAAGGGGCAAGTCAGATTATTGGGCAGTACTACCAACTCATTCGCCTTGGTTTCGAGGGATACAAATTGATTATGGAAAATTGCAGAGCGAATGCTAGATATCTGACACAAATCCTGGAAAAGACTGGACGTTTCAAAATTCTGTCGAAAGACATGGGCGTGCCTGTGGTTGCATTCTCGCTCAAGGACAAGAGCCTGGGACACGATGAATACGAGATCTCCGATCATTTGCGGAAGTTCGGGTGGGTTGTTCCCGCTTATACAATGGCTCCCGATGCTCAGCATGTCTTGCTGTTACGCGTTGTTGTTAGGGAGGACTTCAGTAGAAGTCTGGCGGAGCGACTGGCTCAGAATATTGAGCAGGTTTTGCAGGAATTAGAAGCTGCTCATCCTCAAACCGCTACAGTAGTGAAGGAGGTCTTGATAACAGAAGATGGGCAGAATGATCAGGTGGGGGCGAAGGAAAATTCTAAAAAGACTCATGACAAGAGAAGACGGGGACGCCATGCTCGCCATCCTGATTCCGTGGACAAAACAAAGGGCATTTGTTAA___ATCTTCTTATTTCTATGTTGACCGGTCTTTTCGTTCTGGGTTTACTTACTGAAATAAAGTTTCAAGAAATGTGTAAGCAATTTCCTATAATCATCGGAAAAGAGCGTGTAATTTGTGGCGTGACCGAATAATTATGTGTCGAAAACGGGAAGAAGATCAGAAATTGTGTGACTGCGCAAAATTTCTCCACTGGAGAGGTCCCACCAAGATTTGAACCTGGGTTACTGGTTCAGACAACAATGCCCCTTCACTGGACCTTTGGACCTTTATGTTTGGTTTGTTCCAGAAACGCATTAGCTGGATAATTCGCTAAAAAGATATTCAGGAAAATGGAAAATAGTTGTTGAACTTGTAATATTGAAAATATTACTCTTAATCGTTGCCTACCAGA

Fln Alignment:

Contig11456___MVLSAAVESEDSVHSCMFASRYMQSSLPKFRLPERSIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMSAINKNYVDMDEYPVTTDLQNRCVNMIARLFHAEVEDGDQAVGVATVGSSEAIMLAGLAFKRKWQNKMKAQGKPSDKPNIVTGSNVQVCWEKFARYFEVELKEVKLTEDYYVMNPKKAVEMVDENTICVCAILGSTYNGEFEDVKMLNDLLLQKNKQTGWDTPIHVDAASGGFVAPFIYPDLEWDFSLPLVRSINVSGHKYGLVYAGVGWVIWRSKQDLPEELIFHINYLGTDQPTFTLNFSKGASQIIGQYYQLIRLGFEGYKLIMENCRANARYLTQILEKTGRFKILSKDMGVPVVAFSLKDKSLGHDEYEISDHLRKFGWVVPAYTMAPDAQHVLLLRVVVREDFSRSLAERLAQNIEQVLQELEAAHPQTATVVKEVLITEDGQNDQVGAKENSKKTHDKRRRGRHARHPDSVDKTKGIC
B8LNM2__________________MVLTTATESNDSINSCMFASRYMQTPLPRFRMPEKSIPKDAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMSAVNKNYVDMDEYPVTTDLQNRCVNMIARLFHAEVEDGDQAVGCATVGSSEAIMLAGLAFKRKWQNKRKAQGKPYDKPNIVTGSNVQVCWEKFARYFEVELKEVKLREGYYVMDPKKAAAMVDENTICVCAILGSTYNGEFEDVKMLNDLLVQKNKETGWNTPIHVDAASGGFIAPFIYPDLEWDFRLPLVRSINVSGHKYGLVYAGVGWVVWRSKQDLPEELIFHINYLGADQPTFTLNFSKGASQIIGQYYQLIRLGFEGYKLIMENCRANARYLTEILEKTGRFSILSKDVGVPVVAFSLKDKSLGHDEYEISDHLRKFGWVVPAYTMAPDAQHVLLLRVVVREDFSRTLAERLAHNIEQVLQEFEALHPKINKVVEEILITEDDKNDQVEANENSKKTHEKRRTGRHARHPDSVAKTKGIC

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
738	25	75			0.996473
741		75	25		0.996473
973		5		94	0.998578
976			94	5	0.998578
1137	15			84	0.999986
1174	12		75		0.999931
1178	75			25	1.0
1224	88			11	0.923564
1544		85		14	0.999981
1610	10	90			0.90298
1612	10		90		0.90298
1614			90	10	0.90298
1620	88		11		0.923564
1621	88			11	0.923564
1648	22			77	0.999999
1716	12	87			0.992554
1717	87	12			0.992554
1733		71		28	1.0
1748	80		20		0.995493
1756	25		75		0.996473
1758	25		75		0.996473
1760	20		60	20	0.99255
1762		75	25		0.996473
1763		75		25	0.996473
1790			25	75	0.996473
1810		75	25		0.996473
1863		25		75	0.996473
1938	16		83		0.994512
1939		16	83		0.994512
1942	83			16	0.994512
1948		66		33	0.997452
1953	66		33		0.997452
1954	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain