SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11436

Length: 1346 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11436

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22904	153/170
SustainPine v2.0	sp_v2.0_unigene60251	5/170
SustainPine v2.0	sp_v2.0_unigene60358	8/170
SustainPine v2.0	sp_v2.0_unigene80043	2/170

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S3a-2 [Arabidopsis thaliana] sp\|Q42262.3\|RS3A2_ARATH RecName: Full=40S ribosomal protein S3a-2 emb\|CAA04689.1\| Putative S-phase-specific ribosomal protein [Arabidopsis thaliana] emb\|CAA18846.1\| Putative S-phase-specific ribosomal pro	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	40s ribosomal protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%
Blast2go	cell wall	GO:0005618	Cellular Component	92%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV8

Fln msg:

Fln protein: MAVGKNKRISKGKKGGKKKAVDPFSKKDWYDVKAPATFNTRTVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVREATSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPVDEVPAEVETELVGA*

Protein Length: 263

Fln nts: GACACCAAAACTTCGTGAAAATAATCTCCTATTTTGTTAATGAAAAGGCATTGCTTCAAAACCCTTCTCGTCCTTTGTTAGGGTTTTGGTATATAGTTAGGGTTCTTTTCAGAGAACCTGGAGGCGGCGGTGTAAATCGATTTGGGAGGAGGGTGTAGCTGTTCGCTGAGCTGCTTCTGCAACAACA_-_ATGGCTGTCGGGAAGAACAAGCGCATATCCAAGGGAAAGAAGGGAGGCAAGAAGAAGGCTGTCGACCCCTTCTCAAAGAAGGATTGGTATGATGTAAAGGCTCCTGCTACTTTTAACACAAGAACAGTTGGAAAGACCCTTGTTACACGGACTCAGGGTACTAAGATTGCATCTGAAGGGCTTAAGCATCGTGTGTTTGAGGTTTCACTAGCTGATCTTCAGAATGATGAAGATCAAGCGTACAGAAAGATCAAGCTTCGTGCAGAGGATGTTCAGGGACGGAATGTCCTCACTAATTTCTGGGGAATGGATTTCACCACTGATAAGCTTAGATCCCTGGTCCGCAAGTGGCAGACTTTGATTGAAGCTCACGTGGATGTTAAGACAACAGATAACTATGGTTTGCGTATGTTCTGCATTGGATTCACAAAGAGGAGGCCCAATCAAGTCAAGCGAACATGCTATGCCCAAACAAGTCAAATAAGACAGATTCGTAGGAAAATGAGAGAGATCATGGTACGTGAAGCTACTTCATGTGATCTGAAAGAGCTAGTGGCAAAATTTATTCCTGAGGTGATTGGGAAGGAGATTGAAAAAGCTACTTCCTCAATTTATCCTCTGCAAAATGTATTCATCAGGAAAGTTAAAATTTTGAAGGCACCGAAATTTGACCTTGGAAAGCTTATGGAGGTACATGGAGATTATTCTGAGGATGTTGGAGTCAAGGTTGATAGGCCAGTTGATGAGGTACCTGCTGAAGTAGAGACTGAACTCGTCGGTGCTTGA___GTAGTTGTCAGCTGTGAGAAGTTGATTTAGAATAATATTATATTATTATTGAATAGGAGGATTTTGATAAAATTGAGTTTCTGCAGCTCAATTATACTTTGGCTTGACCAGTTCTTAGATTCAAAAGTTTTTCAATTTTACAATATGATTATTTCGGGGTAGTTCGAAATATGTGTCTCAATATTTTGTTACGGGACATGAACCATGCTGTTCTTTGAGCAGATGATGAGAGTTGGATAGTCTAATTTGGTGTTTGCTTAGCAACATTTCTTATTTTAACTTTGTTCTTTTGGGTTTTGAAACCGTGTATATGCTGATGGAACCTGTTTTTTCGCATAGAACTGGAAGTGTTATTTCACATGGTGTTTACATT

Fln Alignment:

Contig11436___VDPFSKKDWYDVKAPATFNTRTVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYGLRMFCIGFTKRRPNQVKRTCYAQTSQIRQIRRKMREIMVREATSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPVDEVPAEVETELVGA
A9NNV8__________________VDPFTKKDWYDVKAPSTFNTRTVGKTLVTRTQGTKIASEGLKHRVFELSLADLQNDEDQAFRKIKLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMTEIMIREASSCDLKELVAKFIPEVIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRTTEEAPAEAEAELVGA

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
779	25			75	0.996473
782	75			25	0.996473
897		10		89	1.0
929		13		86	1.0
939	90		9		0.999872
963		90		10	0.999898
974	10		89		0.999919
975	88		11		0.999937
990		11		88	0.999952
991	12		87		0.999964
1006		80	6		0.999961
1008	6		13	80	0.999961
1009	73		13	13	0.999956
1011		23		76	1.0
1026	11		88		0.923564
1027	88	11			0.923564
1030	75			25	1.0
1078		50		50	1.0
1099	90	10			0.90298
1102			87	12	0.992554
1107	14			85	0.993533
1148			75	25	0.996473
1182	25		75		0.996473
1183	25	75			0.996473
1192		25	75		0.996473
1205		12	87		0.992554
1255		75		25	0.996473
1280		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain