SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11333

Length: 846 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11333 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7712	12/12

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TP64_VITVI	-	-	67%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	serine threonine protein phosphatase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	82%
Blast2go	iron ion binding	GO:0005506	Molecular Function	82%
Blast2go	manganese ion binding	GO:0030145	Molecular Function	82%
Blast2go	protein binding	GO:0005515	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3	Serine/threonine protein phosphatase, BSU1	IPR012391	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
145		80	20		0.995493
146	80			20	0.995493
156	10			90	0.90298
157	80			20	0.999996
158	88		11		0.923564
222	12		87		0.992554
224	12		87		0.992554
226	87			12	0.992554
324	16			83	0.994512
379		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain