SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11306

Length: 1050 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11306 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2756	14/14

Source	Descriptions	Term	Type	Identity
AutoFact	Male-specific transcription factor M88B7.2 n=1 Tax=Marchantia polymorpha RepID=Q6J3Q5_MARPO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	71%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	71%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC32

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 302 - 351

Fln protein: MSDADHLDADSQGVHNHPQPQQHGYYAHRQQHIHATSQGHVSGHHVHLHDVHMQGHVAGGVGGHPEAQGGEPRHLQLQYIHEHGHSLHHSDDNGLGEEQDDGDGENDSMEGDIPSSGCNLGDSQKIVPVRSQATNQLTLSYQGEVYVFDSVPPEKVQSVLLLLGGREIPPGLSGMPIHGHHHQKVLADIPQRLNQPQRIASLTRFREKRKERCFDKKIRYSVRKEVALRMQRNKGQFTSTKSNSEDLGSSAAKWDPSQGWHPDSNGNQQEVVCLHCGIGERSTPMMRRGPAGPRTLCNACGT

Protein Length: 303

Fln nts: AATGTAGTGATTGACGAATTATTAGTCAGTGGGATGCCGGGAGGGTGTTACTAGGGTTCATAACTTGACCTGAGTTTAAAGGGTTGATTATATCTGGTGTTCCGGCGTTTGACAGAAATTCAATTAGAGTTATGTAAAAAAG_-_ATGTCGGACGCGGATCATCTGGATGCTGATTCTCAAGGTGTCCACAACCACCCTCAACCGCAGCAGCATGGTTACTATGCGCACAGGCAACAGCACATACATGCCACTTCTCAAGGACATGTGAGCGGCCACCATGTTCATCTGCATGATGTGCACATGCAAGGTCATGTTGCGGGAGGTGTCGGCGGCCACCCGGAAGCCCAGGGAGGAGAGCCGCGGCATCTCCAGTTGCAATACATTCATGAACACGGGCATTCGCTCCACCATAGTGATGATAATGGGCTGGGAGAAGAGCAAGATGATGGTGATGGCGAGAACGATAGCATGGAGGGCGATATTCCTTCCTCTGGATGTAACCTTGGAGATTCCCAGAAGATTGTACCTGTTCGCTCTCAGGCAACGAATCAGCTCACTCTTTCATACCAGGGAGAGGTTTATGTGTTTGATAGCGTGCCACCTGAGAAGGTACAGTCAGTGCTTTTACTTTTGGGTGGTCGTGAAATACCTCCAGGCCTCTCAGGCATGCCTATTCATGGCCATCATCATCAAAAGGTTTTGGCAGACATTCCACAACGTTTGAATCAACCACAAAGAATTGCTTCACTTACGAGATTCCGGGAAAAGCGTAAAGAACGTTGTTTTGACAAGAAGATCCGCTACAGTGTGCGGAAAGAAGTTGCTCTCAGGATGCAACGTAACAAAGGTCAATTTACATCTACAAAGTCCAATTCTGAGGATTTGGGTTCATCTGCAGCAAAGTGGGATCCCTCTCAAGGTTGGCACCCTGACAGTAATGGTAACCAACAAGAAGTTGTATGCCTTCACTGTGGTATCGGAGAAAGATCTACTCCAATGATGCGTCGTGGGCCAGCTGGACCGAGGACACTTTGCAATGCTTGTGGGACATT

Fln Alignment:

Contig11306___MSDADHLDADSQGVHNHPQPQQHGYYAHRQQHIHATS-QGHVSGHHVHLHDVHMQGHVAGGVGGHPEAQ--GGEPRHLQLQYIH--EHGHSLHHSXXXXXXXXXXXXXXXXDSME-GDIPSSGCNLGDSQKIVPVRSQATNQLTLSYQGEVYVFDSVPPEKVQSVLLLLGGREIPPGLSGMPIHGHHHQKVLADIPQRLNQPQRIASLTRFREKRKERCFDKKIRYSVRKEVALRMQRNKGQFTSTKSNSEDLGSSAAKWDPSQ-GWHPDSNGNQQEVVCLHCGIGERSTPMMRRGPAGPRTLCNACG
D5AC32__________________MSDTDNLDPESRVIHNHHQ--HHSFYPDRQAPIHAVNAHAHVAAHHVPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSNDNGAGEEQDEGDGDNNCMEEADVQSDGDNLGEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIASLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKADSKDLISAGHKWDPSEGGWTPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
469	85			14	0.993533
480	16			83	0.994512
481		83		16	0.994512
707	25	75			0.996473
708	25			75	0.996473
709			75	25	0.996473
711			75	25	0.996473
738			75	25	0.996473
768	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain