SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11243

Length: 1097 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11243 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10116	21/21

Source	Descriptions	Term	Type	Identity
AutoFact	Calcineurin B-like protein 01 n=1 Tax=Vitis vinifera RepID=C4P7Y8_VITVI	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	calcineurin b-like protein 1	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	90%
Blast2go	calcium-mediated signaling	GO:0019722	Biological Process	90%
Blast2go	response to cold	GO:0009409	Biological Process	90%
Blast2go	stomatal movement	GO:0010118	Biological Process	90%
Blast2go	potassium ion import	GO:0010107	Biological Process	90%
Blast2go	response to salt stress	GO:0009651	Biological Process	90%
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	90%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	90%
Blast2go	kinase binding	GO:0019900	Molecular Function	90%
Blast2go	cytoplasm	GO:0005737	Cellular Component	90%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	90%
Blast2go	plasma membrane	GO:0005886	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3		IPR015757	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Recoverin	IPR001125	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKN8

Fln msg:

Fln protein: MGCFNSKLTKHSPGYEDPVKLAAETAFSVSEVEALYELFKKISSSVIDDGLINKEEFQLALFKNSKKENLFADRVFELFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCSGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEADGDRDGRIDRDEWQQFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT*

Protein Length: 215

Fln nts: ATCACTGTCCTGATCTTCGTCGCCTTTGTTTCTATGAAAAGTTAAGTTACTGAAGCCAGTCAGTGCAGGAGGAATACTTTTCCAATTAAATAATATTCGCAGAGCTTTTGAACTCATGCGGGATTCAAGCGGCTCTTGAACCAAATAGATCACATGTTATTCTTCTGCAATGCTGACGATTCGCACGGCTTTTCCAGGGCTGCCATGAAACGAGCTAACAAGCCAGTGTGGTCTACAGAGGTGGAAAAGCTCCAAAGTCTTCTACCCCAAAGTCACTCTAATTTGCCAGATCTTGTGTCTTAGTCTGAGCTATTTGTCAATAA_-_ATGGGTTGCTTCAATTCAAAGTTAACTAAGCATTCTCCAGGGTATGAAGACCCTGTAAAGCTTGCAGCAGAGACAGCATTTAGTGTAAGCGAGGTTGAAGCTTTGTATGAGCTTTTTAAAAAGATTAGCAGCTCTGTTATTGATGATGGTCTCATAAACAAGGAGGAGTTTCAGCTGGCATTATTTAAGAACAGCAAGAAGGAGAACCTCTTTGCTGATCGGGTCTTTGAGTTATTTGATGTAAAGAGGAAAGGAGTTATTGATTTTGGTGACTTTGTTCGATCTCTTAGCGTTTTCCATCCAAATGCACCTCAAGAAGATAAAATCGACTTTGCATTCAAGCTGTATGATTTGCAGTGCAGTGGTTATATCGAACGTGAAGAGGTGAAACAAATGTTAATAGCACTTTTATGTGAGTCAGAAATGAAATTAGCTGATGAGGTCATTGAGACGATTCTTGACAAGACATTCCAAGAAGCTGATGGAGACCGAGATGGGCGAATTGATCGAGATGAATGGCAACAATTTGTATCCCATAATCCTTCATTAATGAAGATAATGACTCTTCCTTATTTGAAGGATATCACCACAACATTTCCAAGTTTTGTATTTAATTCAGAAGTGGATGACATTGCCACTTGA___GTCTGCCATGCCCATTCATGTTAATGAAACAAGCGGTCAAAGTGGTAAAACTCGGCATTTGTTACATTGCTTTAGTTATAAGAGACAGTTTCAAGATCACTTAAGGTAAAGGGCACTTTCCAAAGATACATT

Fln Alignment:

Contig11243___MGCFNSKLTKHSPGYEDPVKLAAETAFSVSEVEALYELFKKISSSVIDDGLINKEEFQLALFKNSKKENLFADRVFELFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCSGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEAXXXXXXXXXXDEWQQFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT
B8LKN8__________________MGCFNSKFTKHSPGYEDPVKLAAETAFSVSEVEALYELFKKISSSVIDDGLINKEEFQLALFKNSKKENLFADRVFDLFDVKRKGVIDFGDFVRSLSVFHPNAPQEDKIDFAFKLYDLQCTGYIEREEVKQMLIALLCESEMKLADEVIETILDKTFQEADVDQDGRIDRDEWQKFVSHNPSLMKIMTLPYLKDITTTFPSFVFNSEVDDIAT

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
195	25	75			0.996473
196	25	75			0.996473
348			16	83	0.994512
357	11		88		0.923564
359		88	11		0.923564
449	28		71		1.0
468	11		88		0.923564
474	12		87		0.992554
475		12	87		0.992554
478			87	12	0.992554
527	25	75			0.996473
530	25	75			0.996473
744	16			83	0.994512
745		16	83		0.994512
746	16	83			0.994512
787		20		80	0.995493
789			80	20	0.995493
790		80		20	0.995493
831	25		75		0.996473
832	25		75		0.996473
833			75	25	0.996473
856		75	25		0.996473
868	25	75			0.996473
871		75		25	0.996473
872	75			25	0.996473
922		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain