SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11172

Length: 885 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene11172

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23349	3/20
SustainPine v2.0	sp_v2.0_unigene25569	3/20
SustainPine v2.0	sp_v2.0_unigene36179	13/20

Source	Descriptions	Term	Type	Identity
AutoFact	putative transcriptional activator [Oryza sativa Japonica Group] gb\|EEC83926.1\| hypothetical protein OsI_29998 [Oryza sativa Indica Group]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	smad fha domain-containing protein	-	-	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NRK7

Fln msg: Overlapping hits, possible frame ERROR between 811 and 802, Distance to subject end: 27 aas, your sequence is shorter than subject: 295 - 339

Fln protein: MLQTFSIVLGRNSKKSSVDIDLSYLGGGMNISRQHARIYYDFDRKRFALEVIGKNGCLVEGVLYLPGNPPIKLDSQDLLQIGDKKFYFLLPVRKIVKPQHQHLNLNANANNAPLGLPTSAVAVPGGASGTLKKRGGRKEDDHYQQQEPQHPPTKKMEVAGQAGRRIGQRLTRAETVSFLIMVTP*NAQSLHHA*AGLSISFRSKRRFEKKSGP*SRDVSADARRKRCSFSCCNCTFRPCGPGEWMAMAKLHSELLEHYSGIWHQSRxxxxxTSDDWADSESKGRPWIGLLSLLRK

Protein Length: 296

Fln nts: AATGTTGCAGACTTTCTCCATCGTCCTGGGCCGGAATAGCAAGAAATCTTCTGTTGACATTGACTTATCCTACCTTGGGGGCGGCATGAACATTTCCCGTCAACATGCCAGAATTTACTACGACTTCGACAGGAAAAGATTTGCCCTGGAAGTCATTGGGAAGAACGGCTGCCTGGTGGAAGGGGTGCTCTACCTCCCGGGGAACCCGCCCATCAAATTGGATTCTCAGGATTTGCTTCAGATTGGGGACAAGAAATTCTATTTTCTGTTACCTGTCAGAAAAATCGTTAAACCCCAACACCAGCACCTCAATCTCAATGCCAATGCGAATAATGCCCCTCTTGGTCTGCCCACATCAGCAGTTGCCGTGCCAGGTGGCGCATCAGGGACATTGAAGAAGAGGGGCGGGAGAAAAGAAGACGATCACTATCAGCAGCAGGAGCCGCAACATCCACCCACAAAAAAAATGGAGGTCGCAGGGCAAGCAGGACGGAGGATTGGACAACGCCTCACGAGAGCGGAAACAGTCAGCTTCCTCATCATGGTCACCCCATGAAATGCACAATCCTTACATCATGCCTAAGCAGGGCTTTCCATATCATTCAGATCAAAAAGGAGATTTGAGAAGAAGAGCGGACCATGAAGCAGAGATGTTTCAGCAGATGCAAGAAGAAAAAGATGTAGTTTCAGCTGTTGCAACTGTACTTTCAGACCTTGTGGTCCAGGGGAATGGATGGCAATGGCAAAACTTCATTCTGAGCTTCTTGAACACTACAGTGGGATTTGGCATCAGAGTAGGxxxxxxxxxxxxxxxACATCAGATGATTGGGCAGATTCCGAGAGTAAAGGGAGACCATGGATTGGACTTCTTTCATTACTTAGAAAA

Fln Alignment:

Contig11172___LQTFSIVLGRNSKKSSVDIDLSYLGGGMNISRQHARIYYDFDRKRFALEVIGKNGCLVEGVLYLPGNPPIKLDSQDLLQIGDKKFYFLLPVRKIVKPQHQHXXXXXXXXXXXXGLPTSAVAVPGGASGTLKKRGGRKEDDHYQQQEPQHPPTKK-MEVAGQAGRRIGQRLTRAETVSFLIMVTP*NAQSLHHA*AGLSISFRSKRRFEKKSGP*SRDVSADARR---------------KRCSFSCCNCTFRPCGPGEWMAMAKLHSELLEHYSGIWHQSRIxxxLTSDDWADSESKGRPWIGLLSLLRK
A9NRK7__________________MQTYSIVLGRNSKKSSVDIDLSYLGGGMNISRQHARIYYDFDRKRFALEVIGKNGCLVEGVLYLPGNPPIKLDSQDLLQIGDKKFYFLLPVRKIVKPQHQHLNLNANANNASLALPTSAVPVPGGASGTLKKRGGRKEDDHYQQQEQQHPPTKKWRSQAKQDGGLDNASRDRKQSAS---------SWSPH--------EMHNPYIMPKQGFPYHSDQKGDLRRRADHEAEMFQQMQEEKDVVSAVATVLSDLCGPGEWMPMAKLHSELLEHYSGIWHQSRIxxxLTSDDWADSDSKGRPWIGLLSLLRK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
289	16		83		0.994512
290	16			83	0.994512
292	83		16		0.994512
293	83			16	0.994512
323	20	80			0.995493
326	80			20	0.995493
338	25	75			0.996473
340	25	75			0.996473
341		75		25	0.996473
348	20			80	0.995493
349	20	80			0.995493
353		80		20	0.995493
368	20	80			0.995493
370	20		80		0.995493
372			80	20	0.995493
435			75	25	0.996473
436		75		25	0.996473
631			60	40	1.0
632	60			40	1.0
719	25			25	0.995533
720	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain