SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11160

Length: 475 nt

UniGene Fasta

>biog3_v1.0_unigene11160
TGCTGGCCGTCGATTATACGAGTTTGCTTCAGTCTAGCTACACTGATTCCTTAAAGTTTATACTTGATGACGATGGAGAAGATTCGAATTCCAGCGAGTATCATGTCAACTGGAAGCCTTTGGCTGGAAATCAGCAGAATTTCGTCAGCTTGGGAACCGGGGAATTTCGAGAAGATGACAAACCAGTCGTGCAACAGGCAGATCCAGAGGGCAGTCTAGGGTACGATTCTTCGATGCTAAATAGTAACGTCGAGTTCTGGAGACATGAGCTATCTCTGTGGCCAGCAACAGAAAGTAACACAATGGGAGAACCAGCTGTGGCCTACTCATCCTCGAATTGCGCAGCACCGCCTGTGAACGGGCAGCACAAAAAAGTAAAACTGGAACCCTCGGGTACCAATTTCTCCACAGAGCAATTTCTTGAGCTTGCAGATCATACCATGGGCACAAACATGGAATGCAAAAGCAATACATT

Ace file of the UniGene biog3_v1.0_unigene11160

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11509	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	R2R3-MYB transcription factor MYB11 [Picea glauca]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	83%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	83%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	83%
Blast2go	response to salt stress	GO:0009651	Biological Process	83%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	83%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPW4

Fln msg: Distance to subject end: 39 aas, your sequence is shorter than subject: 157 - 265

Fln protein: LAVDYTSLLQSSYTDSLKFILDDDGEDSNSSEYHVNWKPLAGNQQNFVSLGTGEFREDDKPVVQQADPEGSLGYDSSMLNSNVEFWRHELSLWPATESNTMGEPAVAYSSSNCAAPPVNGQHKKVKLEPSGTNFSTEQFLELADHTMGTNMECKSNT

Protein Length: 158

Fln nts: TGCTGGCCGTCGATTATACGAGTTTGCTTCAGTCTAGCTACACTGATTCCTTAAAGTTTATACTTGATGACGATGGAGAAGATTCGAATTCCAGCGAGTATCATGTCAACTGGAAGCCTTTGGCTGGAAATCAGCAGAATTTCGTCAGCTTGGGAACCGGGGAATTTCGAGAAGATGACAAACCAGTCGTGCAACAGGCAGATCCAGAGGGCAGTCTAGGGTACGATTCTTCGATGCTAAATAGTAACGTCGAGTTCTGGAGACATGAGCTATCTCTGTGGCCAGCAACAGAAAGTAACACAATGGGAGAACCAGCTGTGGCCTACTCATCCTCGAATTGCGCAGCACCGCCTGTGAACGGGCAGCACAAAAAAGTAAAACTGGAACCCTCGGGTACCAATTTCTCCACAGAGCAATTTCTTGAGCTTGCAGATCATACCATGGGCACAAACATGGAATGCAAAAGCAATACATT

Fln Alignment:

Contig11160___LAVDYTSLLQSSYTDSLKFILDDDGEDSNSSEYHVNWKPLAGNQQNFVSLGTGEFREDDKPVVQQADPEGSLGYDSSMLNSNVEFWRHELSLWPATESNTMGEPAVAYSSSNCAAPPVNGQHKKVKLEPSGTNFSTEQFLELADHTMGTNMECKSN
B8LPW4__________________LAVDYTSLLQSSYTDSLKFILDDDGEDSNSSEYQVNWKPSAGNQQNFVSLGCGEFQDDDNAVVQQADPEGSLAYDSSMLNSNVEFWRHELSLWPTTENNTLGEQVLAYSSSNGAAAAVSGQQKKVKLEPSGTNFSVEQFLELADHSMGTNMEGKSN

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
59		20		80	0.995493
136	20		80		0.995493
139			80	20	0.995493
140	75			25	0.996473
246	11		88		0.923564
247		11		88	0.923564
249	88			11	0.923564
250		88		11	0.923564
347			85	14	0.993533
348		85		14	0.993533
356	16		83		0.994512
357		16		83	0.994512
358	16		83		0.994512
359	83			16	0.994512
360	66	16		16	0.988813
383		33	66		0.997452
410	33		66		0.997452
411		33		66	0.997452
412	33		66		0.997452
413			66	33	0.997452
414	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain