SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11083

Length: 473 nt

UniGene Fasta

>biog3_v1.0_unigene11083
ATACTGCAGGAGAGTTGTGTAGATGCATCTGGGTCTGTTATAGTGTACGCACCCGTGGACGTCCCAGCAATCAATATCGCTATGAGCGGGGAGGATCCTTCATACATAGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCAGACGCTCAAAATAGATCTTCTACTAGTTCACTCCTCGAAGGGGCGAACAGCAGCAGCAATAGCAGCAACAGCAGTGGATTGGATAGCCCGCTCACAGGAGGAGGTTCATTACTCACTGTGGCCTTTCAGGTCCTTGTCAGCCATTTACCAACAGCCAAGCTGGGTTTAGATTCTGTTACCACAATCAATAATCTCATATGCAATACAGTGCAGCAGATCAAATCTGCATTGCACTGTGCAGATGTCTGAATCGCAGTGTAATTATCAGAGTAGGGGTGGAGGGGGCGGCATGCAGAGAAACAACATCAAAAACATTCTATCCGGTAGTTGCT

Ace file of the UniGene biog3_v1.0_unigene11083

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9478	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	TPA_inf: class IV HD-Zip protein HDZ43 [Physcomitrella patens]	-	-	55%
FL-Next	tr=Homeodomain protein HB2; Picea abies (Norway spruce) (Picea excelsa).	-	-	55%
Blast2go	homeobox-leucine zipper protein meristem l1	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	epidermal cell differentiation	GO:0009913	Biological Process	71%
Blast2go	cotyledon development	GO:0048825	Biological Process	71%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Lipid-binding START	IPR002913	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8S555

Fln msg: your sequence is shorter than subject: 130 - 708

Fln protein: ILQESCVDASGSVIVYAPVDVPAINIAMSGEDPSYIALLPSGFAILPDAQNRSSTSSLLEGANSSSNSSNSSGLDSPLTGGGSLLTVAFQVLVSHLPTAKLGLDSVTTINNLICNTVQQIKSALHCADV*

Protein Length: 131

Fln nts: ATACTGCAGGAGAGTTGTGTAGATGCATCTGGGTCTGTTATAGTGTACGCACCCGTGGACGTCCCAGCAATCAATATCGCTATGAGCGGGGAGGATCCTTCATACATAGCCCTTCTCCCCTCTGGATTTGCCATTCTTCCAGACGCTCAAAATAGATCTTCTACTAGTTCACTCCTCGAAGGGGCGAACAGCAGCAGCAATAGCAGCAACAGCAGTGGATTGGATAGCCCGCTCACAGGAGGAGGTTCATTACTCACTGTGGCCTTTCAGGTCCTTGTCAGCCATTTACCAACAGCCAAGCTGGGTTTAGATTCTGTTACCACAATCAATAATCTCATATGCAATACAGTGCAGCAGATCAAATCTGCATTGCACTGTGCAGATGTCTGA___ATCGCAGTGTAATTATCAGAGTAGGGGTGGAGGGGGCGGCATGCAGAGAAACAACATCAAAAACATTCTATCCGGTAGTTGCT

Fln Alignment:

Contig11083___ILQESCVDASGSVIVYAPVDVPAINIAMSGEDPSYIALLPSGFAILPDAQNRXXXXXXXXXXXXXXXXXXXXXXXXPLTGGGSLLTVAFQVLVSHLPTAKLGLDSVTTINNLICNTVQQIKSALHCAD
Q8S555__________________ILQKTCTNASGSLVVYAPVDIPAMHVVMSGGDPPYVALLPSGFAILPNGPKCRPLALNPSGNGVGVNSPRV---------GGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCED

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
305	33		66		0.997452
306	33			66	0.997452
308			33	66	0.997452
309	66			33	0.997452
346	83		16		0.994512
347		83		16	0.994512
362	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain