SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11031

Length: 501 nt

UniGene Fasta

>biog3_v1.0_unigene11031
GGTTTTGGAACAGGAACCAGAGGTCCTGCCTTGCCATCCCTCCGCATCTCCGTTGTCACCACAACTGTCATTCAGTGGGAGTCCTTACATGGGTCCTTCTGTGAGGGTATGGGATCCTTACAACATACTCACACCCGTTTCTCTATCGCCTACTCATTCCACTTCCAGTTCTCTCCACTCCAATGCTTTGGATCATTCTAGGTGGTTGCCTATGGAGGATGATCTCATCACAGAAATTTATTTGATCAGGCATGCCGAGAGCACCATGAATGAGAAGGCAGAACTGATTGGGGGCAGATCTCCTTCGGCAACATTGACGGCCAATGGGAAGAGGCAGGCCAGGGCTCTGGGGGTCTTTCTGAAGTCTCAGGGAATCATTTTCAATGCAATGTATTCGTCCCCACTCGACCGTGCCAAGCAAACTGCACTGGCCATTTGCCAGGAACTGAATATCTCAGAAGAGAAGTTAGAATACTCTGATTCACTGATGGAGATGACATT

Ace file of the UniGene biog3_v1.0_unigene11031

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1066	10/10

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	-	-	1.0e-25	36%
FL-Next	tr=Putative fructose-2,6-bisphosphatase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	fructose- -bisphosphatase	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	RNA modification	GO:0009451	Biological Process	65%
Blast2go	cytosol	GO:0005829	Cellular Component	65%
Blast2go	mitochondrion	GO:0005739	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	-
Sma3	Uncharacterised conserved protein UCP036920, phosphoglycerate mutase, plant X4/Y4	IPR017070	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9LW33

Fln msg: Distance to subject end: 199 aas, your sequence is shorter than subject: 166 - 399

Fln protein: VLEQEPEVLPCHPSASPLSPQLSFSGSPYMGPSVRVWDPYNILTPVSLSPTHSTSSSLHSNALDHSRWLPMEDDLITEIYLIRHAESTMNEKAELIGGRSPSATLTANGKRQARALGVFLKSQGIIFNAMYSSPLDRAKQTALAICQELNISEEKLEYSDSLMEMT

Protein Length: 167

Fln nts: GGTTTTGGAACAGGAACCAGAGGTCCTGCCTTGCCATCCCTCCGCATCTCCGTTGTCACCACAACTGTCATTCAGTGGGAGTCCTTACATGGGTCCTTCTGTGAGGGTATGGGATCCTTACAACATACTCACACCCGTTTCTCTATCGCCTACTCATTCCACTTCCAGTTCTCTCCACTCCAATGCTTTGGATCATTCTAGGTGGTTGCCTATGGAGGATGATCTCATCACAGAAATTTATTTGATCAGGCATGCCGAGAGCACCATGAATGAGAAGGCAGAACTGATTGGGGGCAGATCTCCTTCGGCAACATTGACGGCCAATGGGAAGAGGCAGGCCAGGGCTCTGGGGGTCTTTCTGAAGTCTCAGGGAATCATTTTCAATGCAATGTATTCGTCCCCACTCGACCGTGCCAAGCAAACTGCACTGGCCATTTGCCAGGAACTGAATATCTCAGAAGAGAAGTTAGAATACTCTGATTCACTGATGGAGATGACATT

Fln Alignment:

Contig11031___VLEQEPEVLPCHPSASPLSPQLSFSGSPYMGPSVRVWDPYNIXXXXXXXXXXXXXXXXXXNALDHSRWLPMEDDLITEIYLIRHAESTMNEKAELIGGRSPSATLTANGKRQARALGVFLKSQGIIFNAMYSSPLDRAKQTALAICQELNISEEKLEYSDSLMEMT
Q9LW33__________________VLEQEPEMLPCHASASPLSPQLSSLGTPRLGPSIKVWDPYNVLSPPPQPPSIFSRIVSGD-----------EDRAVTEVYLISHGESDLNLKPDLIGGRCHVAALTANGKRQARALAVFFKSQGVRFNSVYSSPLDRARSMAVSVCQEMSFPEEHVQSSDAVIEMS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
154	33	66			0.997452
156		66		33	0.997452
350			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain