SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene11013

Length: 884 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene11013 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15909	13/14

Source	Descriptions	Term	Type	Identity
AutoFact	Aquaporin, MIP family, TIP subfamily n=5 Tax=Malpighiales RepID=A9P9G2_POPTR	-	-	77%
FL-Next	tr=Germin-like protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	33%
Blast2go	delta tonoplast intrinsic protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	urea transport	GO:0015840	Biological Process	89%
Blast2go	water transport	GO:0006833	Biological Process	89%
Blast2go	ammonia transmembrane transporter activity	GO:0051739	Molecular Function	89%
Blast2go	methylammonium transmembrane transporter activity	GO:0015200	Molecular Function	89%
Blast2go	urea transmembrane transporter activity	GO:0015204	Molecular Function	89%
Blast2go	water channel activity	GO:0015250	Molecular Function	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	89%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	89%
Blast2go	central vacuole	GO:0042807	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%
Blast2go	protein storage vacuole	GO:0000326	Cellular Component	89%
Blast2go	methylammonium transmembrane transport	GO:0072489	Biological Process	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
660			85	14	0.993533
667	28		71		1.0
675	60	40			1.0
688		60	40		1.0
698		60	40		1.0
703	40			60	1.0
729	40		60		1.0
730		40	60		1.0
752	40		60		1.0
763	60		40		1.0
772		60		40	1.0
790	40		60		1.0
802	20	20			0.99255
803	60	40			1.0
804			80	20	0.995493
806	50		50		1.0
818		50	50		1.0
843		50	50		1.0
852	50	50			1.0
855		33	66		0.997452
861		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain