SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10962

Length: 854 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene10962

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10553	19/19

Source	Descriptions	Term	Type	Identity
AutoFact	bZIP DNA-binding protein [Petroselinum crispum]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	32%
Blast2go	bzip domain class transcription factor	-	-	60%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	60%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	60%
Blast2go	nucleus	GO:0005634	Cellular Component	60%

Source	InterPros	Term	Type	Identity
Sma3	cAMP response element binding (CREB) protein	IPR001630	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	G-box binding, MFMR	IPR012900	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
69	33			66	0.997452
70	33			66	0.997452
72	66		33		0.997452
162	33			66	0.997452
163	33		66		0.997452
164		66		33	0.997452
165	66		33		0.997452
166		66		33	0.997452
425			90	10	0.90298
428	90			10	0.90298
435	10		90		0.90298
436	90	10			0.90298
438			90	10	0.90298
578	10			90	0.90298
581		90		10	0.90298
582	90			10	0.90298
595		11	88		0.923564
597			88	11	0.923564
598	88			11	0.923564
630	87			12	0.992554
660	85			14	0.993533
726	25	75			0.996473
727		25		75	0.996473
728	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain