SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10914

Length: 974 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene10914 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1653	20/20

Source	Descriptions	Term	Type	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] emb\|CAC01824.1\| putative protein [Arabidopsis thaliana] gb\|AAL14395.1\| AT5g15050/F2G14_170 [Arabidopsis thaliana] gb\|AAM63425.1\| putative glycosylation enzym	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	77%
Blast2go	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 14	IPR003406	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWZ8

Fln msg: your sequence is shorter than subject: 247 - 433

Fln protein: SASCYPLVTQDDLLHTFSSLPKNLNFIEHTSSLGWKENQRAKPIIIDPGLYLSRKSDIFWVAEKRDIPTAFKLFTGSAWMVLSRAFIEYCVWGWDNLPRTVLMYYANFVSSPEGYFHTVICNTQEFRNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNNDNVSDPCSTIGDTNFLKPGLGAKRLGELIKDLLSPKKLAQTQCK*

Protein Length: 248

Fln nts: TCAGTGCATCGTGTTATCCTCTTGTAACTCAAGATGACTTGCTCCATACATTTTCATCGCTGCCTAAGAATCTAAATTTTATTGAGCATACCAGCAGTTTAGGATGGAAAGAGAATCAAAGGGCGAAACCGATTATTATAGATCCTGGACTGTATTTGTCTAGGAAGTCTGACATTTTTTGGGTTGCTGAAAAAAGAGACATTCCTACTGCATTCAAATTGTTTACAGGTTCTGCTTGGATGGTACTATCTCGAGCTTTTATCGAGTACTGTGTCTGGGGTTGGGACAATCTTCCAAGAACAGTTCTGATGTACTATGCAAATTTTGTTTCTTCACCTGAGGGATATTTCCACACCGTCATTTGTAACACCCAGGAATTTCGGAACACAACAGTCAATCATGACTTACATTACATATCTTGGGATAACCCGCCAAAGCAGCATCCACATTCTCTTGGTTTAAGTGATAGTCCAAAAATGATAGATAGTAAAGCTCCATTTGCAAGGAAATTTCATGGCGATGACCCTGTGCTTGACAAAATAGACAAAGAGCTTCTGGGACGTCAAAATGGGCGTTTTACACCTGGTGGATGGTGTAAAGGAAATAACGATAATGTCAGCGATCCTTGTTCTACTATAGGTGATACAAATTTTCTCAAGCCTGGTCTAGGTGCGAAGAGGCTTGGAGAGTTGATTAAGGATCTCTTGTCTCCTAAAAAACTTGCACAAACACAATGTAAGTGA___AATATGCGTTTTCCATCTCGGGTACCTTTGTGCATTTACTTTCATCTACGAGTTTCCAGCCAATCCCCAATCCGGGACGAGATTGCTGTTACTAGTTTCCAGCCAATTGTAATATGATATAAAATATAAGAATGCCACTGGAAAGCCTCATGGGAATGAGCATATTTTGATCTCACCTTTTAGTTTCCATGGCAATGCATGCTGCAGGATCAGAGTGTATTCTATAACATT

Fln Alignment:

Contig10914___SASCYPLVTQDDLLHTFSSLPKNLNFIEHTSSLGWKENQRAKPIIIDPGLYLSRKSDIFWVAEKRDIPTAFKLFTGSAWMVLSRAFIEYCVWGWDNLPRTVLMYYANFVSSPEGYFHTVICNTQEFRNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNNDNVSDPCSTIGDTNFLKPGLGAKRLGELIKDLLSPKKLAQTQCK
A9NWZ8__________________SASDYPLVTQDDLLHTFQSLPRNLNFLEHTSSLGWKENQRAKPIIIDPGLYMSRKSDIVWVAEKRDIPTAFKLFTGSAWMVLSRAFVEYCIWGWDNLPRTVLMYYANFVSSPEGYFHTVICNTQEFQNTTVNHDLHYISWDNPPKQHPHSLGLSDSPKMIDSKAPFARKFHGDDPVLDKIDKELLGRQNGRFTPGGWCKGNRDNGSDPCSAIGDKNFLKPGLGAKRLGELIKDLLSPAKFAQNQCK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
572	20			80	0.995493
573	60	20			0.99255
575			80	20	0.995493
591	25		75		0.996473
592		25		75	0.996473
593	25		75		0.996473
752	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain