SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10758

Length: 409 nt

UniGene Fasta

>biog3_v1.0_unigene10758
TTCCTTGATTTTCCTCCTGTACTACAACTTCAGTTGAAGCGATTTGAATACGATTTCATGCGAGACACAATGGTCAAGATAAATGATCGATATGAATTTCCACTTCAACTTGACTTGGATAGAGACAATGGCAAATATCTCTCTCCAGATGCAGATAGAAGTGTGCGCAATTTATATACTCTTCATAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGTCATTATTACGCTTTCATTAGACCAACTCTCTCAGACCAGTGGTACAAGTTTGATGATGAACGTGTCACAAAGGAAGAAGTAAAGAGAGCACTTGAGGAGCAATATGGTGGTGAAGAGGAGCTGCCTCAGACAAATCCAGGCCTCATCAACAGTCCAGGATTCATCAACACACCATTTAAATTACATT

Ace file of the UniGene biog3_v1.0_unigene10758

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3528	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb\|AAK25908.1\|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AAN13185.1\| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AED91040.1\| ubiq	-	-	81%
FL-Next	Isoform 2 of Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12	-	-	89%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	92%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPT1-2

Fln msg: Distance to subject end: 600 aas, your sequence is shorter than subject: 136 - 1115

Fln protein: FLDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEEVKRALEEQYGGEEELPQTNPGLINSPGFINTPFKLH

Protein Length: 137

Fln nts: TTCCTTGATTTTCCTCCTGTACTACAACTTCAGTTGAAGCGATTTGAATACGATTTCATGCGAGACACAATGGTCAAGATAAATGATCGATATGAATTTCCACTTCAACTTGACTTGGATAGAGACAATGGCAAATATCTCTCTCCAGATGCAGATAGAAGTGTGCGCAATTTATATACTCTTCATAGTGTTTTGGTTCACAGTGGAGGTGTGCATGGTGGTCATTATTACGCTTTCATTAGACCAACTCTCTCAGACCAGTGGTACAAGTTTGATGATGAACGTGTCACAAAGGAAGAAGTAAAGAGAGCACTTGAGGAGCAATATGGTGGTGAAGAGGAGCTGCCTCAGACAAATCCAGGCCTCATCAACAGTCCAGGATTCATCAACACACCATTTAAATTACATT

Fln Alignment:

Contig10758___FLDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDNGKYLSPDADRSVRNLYTXXXXXXXXXXXXXXXYYAFIRPTLSDQWYKFDDERVTKEEVKRALEEQYGGEEELPQTNPGLINSPGFINTPF
Q9FPT1-2________________FIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLELDLDREDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
273	16			83	0.994512
274		16	83		0.994512
277			87	12	0.992554
286		28		71	1.0
287	28		71		1.0
289		71		28	1.0
360	25	75			0.996473
363			66	33	0.997452
364			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain