SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene10672

Length: 2326 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene10672
GCATGCCCATGAAAACCACGATCACGCTCTTCTCATTTAAAACCCTCATACTCAGGTCTTTCCTGGCAAGTGGCCGGCTTCTGCATTCGACTCAGCCAAAGGTTTTGAATTTTACGGTGACAGAATCGGCATTTTTTTGTGGATTTTGGTGGAGCCGAGAAAGCACATGCAGTTTTTCGTATATTTTCTCAGCGAAGGCAGATAAAATTAGTAAGTATAGATTGGGTTAGCAGGGAAACTTTAGGATCTAAAAATGTCGGGATACGACGGGAGGTATGAAGGAAACGGTGAGGGTTACGATGAATGGGGTTCTTCTCCTCGCGCTAAAGAAGAATACCGGGAATCTTCTCCGTACGATGCTTTTGACGAGAGAGACACGCAACGCCAGCATTCCTTGCGTGATCCAGAAAGAGAACGCCACAGGAGCAAAGAAAAGGACAGGGACAGGGAAAGAGAGAGAGAAAGGGACAGGGATCGACATCATAGAGATCACTATAGAGACAGAACTGAGAGGGATGACAGGGGTAGAGGGCGAACTGAAGATCGTGAGCGACATAGAAGTCATGATTATGATAGGCACAGAGATCATGATCGCGACAGAGAGAGAAGGCACAGGCACAGATCACGCTCTCCTTCAAGGGGTAAATCAAGGCATCGCTCCAAGTCTCGTTCACGCTCACCCTCTAGAAGCAAACGGACAAGTGGTTTTGACATGGCACCACCTGGTGCTGCCATGATACCTGGAACGGCAGTCCCAGGTCAAACCACTGGAATGTCGCAGACAATGCCTGGAATGTTTCCTAATATGTTCCCCTTTGGGAATGCACAGTTTGGAGGTCTTCCCGTGATGCCAGTGCAAGCAATGACACAACAGGCAACTCGTCATGCCCGACGGGTATATGTTGGTGGTCTTCCACCAATGGCTAATGAGCAGACAATTGCTACATATTTTAGTCGCGTTATGGCTGCTATAGGAGGAAATACTGCTGGGCCAGGTGATGCTGTTGTTAATGTCTACATCAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGCGCACAGTTGAAGAGGCCAGCAATGCAATGGCTCTTGATGGTATAATGTTTGAGGGCGTTTCTGTGAGAGTGAGGAGACCAAGTGATTACAATCCCTCATTGGCAGCAGCACTTGGCCCAAGCCAACCCAGTCCCCACCTAAATTTAGCTGCTGTTGGTCTCACACCAGGCTATGGCAGTGCTGTTGGAGGAGCTGAGGGACCTGATAGAATATTTGTTGGTGGCTTACCGTATTACTTCACTGAAGCACAGATAAGAGAACTGCTTGAATCCTTTGGGCCTCTTCGTGGTTTTGATCTCGTTAAGGATAGAGATACGGGTAATTCAAAGGGCTATGGCTTTTGTGTTTACCAGGATCCAGCTGTGACAGACATTGCATGTGCTGCTCTTAATGGGCTTAAAATGGGTGATAAGACTTTGACTGTGCGCCGTGCTACTGCCAGTGGTCAGCCAAAACCAGACCAGGAGAATGTCTTAGCACAGGCTCAACAGCATATAGCTTTACAGAAGCTTGCACTGCAAGTTGGAAGTGGTGTACCTGGTTTGTTTCCAGCTCTTGGCCCCCAGAAACACCTACAAAAGTTGTTTCCTTGACACAGGTTGTGTCAGCAGATGAGCTGAGGGATGATGAAGAGTATGAGGAGATACTAGAAGACATGAGAGAAGAATGTGGAAAATATGGATCAATAGTAAATCTTGTTATCCCCCGTCCTGATCCAAGTGGAGAATCACGTCCTGGGGTTGGAAAGGTGTTTGTGGAATTTTCGGATACTGAAAGTTCTGGCAAGGCAAAAGCTGCGCTGAATGGAAGGAAGTTCGGTGGGAATACTGTTGTTGCAATATATTACCCGGAAGACAAATTCTCTATGGGTGAATACGATTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCTTTCTGTATATTATGGATTTGCTTAATGATGGGGTGATTATTAAGAGCAGTTTTGTATATTAGAGCTTTCATGATTGACAGAAAATTCTATGCTACACTTATTGCATGCAATATTTTATGATATTCCTTGTTTTATTCTGTATTAGGCAAAAATTGGCATTTGGATAAATACCAATGGCTTGGACCTAATCTTTGCCTCACTGTTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCTTTCTGTATATTATGGATTTGCTTAATGACATT

Ace file of the UniGene biog3_v1.0_unigene10672 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3678	59/65
SustainPine v2.0	sp_v2.0_unigene61185	5/65

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Splicing factor U2af large subunit B; AltName: Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa subunit B; AltName: Full=U2 small nuclear ribonucleoprotein auxiliary factor large subunit B; Short=U2 snRNP auxiliary factor large subun	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	mRNA processing	GO:0006397	Biological Process	84%
Blast2go	RNA splicing	GO:0008380	Biological Process	84%
Blast2go	RNA binding	GO:0003723	Molecular Function	84%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	84%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	84%
Blast2go	nucleus	GO:0005634	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	NADH:ubiquinone/plastoquinone oxidoreductase	IPR001750	-	-
Sma3	RNA recognition motif domain, eukaryote	IPR003954	-	-
Sma3	Pre-mRNA-splicing factor 38	IPR005037	-	-
Sma3	U2 snRNP auxilliary factor, large subunit, splicing factor	IPR006529	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1777	IPR013957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1T0

Fln msg: your sequence is longer than subject: 465 - 347

Fln protein: MSGYDGRYEGNGEGYDEWGSSPRAKEEYRESSPYDAFDERDTQRQHSLRDPERERHRSKEKDRDRERERERDRDRHHRDHYRDRTERDDRGRGRTEDRERHRSHDYDRHRDHDRDRERRHRHRSRSPSRGKSRHRSKSRSRSPSRSKRTSGFDMAPPGAAMIPGTAVPGQTTGMSQTMPGMFPNMFPFGNAQFGGLPVMPVQAMTQQATRHARRVYVGGLPPMANEQTIATYFSRVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRTVEEASNAMALDGIMFEGVSVRVRRPSDYNPSLAAALGPSQPSPHLNLAAVGLTPGYGSAVGGAEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRATASGQPKPDQENVLAQAQQHIALQKLALQVGSGVPGLFPALGPQKHLQKLFP*

Protein Length: 466

Fln nts: GCATGCCCATGAAAACCACGATCACGCTCTTCTCATTTAAAACCCTCATACTCAGGTCTTTCCTGGCAAGTGGCCGGCTTCTGCATTCGACTCAGCCAAAGGTTTTGAATTTTACGGTGACAGAATCGGCATTTTTTTGTGGATTTTGGTGGAGCCGAGAAAGCACATGCAGTTTTTCGTATATTTTCTCAGCGAAGGCAGATAAAATTAGTAAGTATAGATTGGGTTAGCAGGGAAACTTTAGGATCTAAAA_-_ATGTCGGGATACGACGGGAGGTATGAAGGAAACGGTGAGGGTTACGATGAATGGGGTTCTTCTCCTCGCGCTAAAGAAGAATACCGGGAATCTTCTCCGTACGATGCTTTTGACGAGAGAGACACGCAACGCCAGCATTCCTTGCGTGATCCAGAAAGAGAACGCCACAGGAGCAAAGAAAAGGACAGGGACAGGGAAAGAGAGAGAGAAAGGGACAGGGATCGACATCATAGAGATCACTATAGAGACAGAACTGAGAGGGATGACAGGGGTAGAGGGCGAACTGAAGATCGTGAGCGACATAGAAGTCATGATTATGATAGGCACAGAGATCATGATCGCGACAGAGAGAGAAGGCACAGGCACAGATCACGCTCTCCTTCAAGGGGTAAATCAAGGCATCGCTCCAAGTCTCGTTCACGCTCACCCTCTAGAAGCAAACGGACAAGTGGTTTTGACATGGCACCACCTGGTGCTGCCATGATACCTGGAACGGCAGTCCCAGGTCAAACCACTGGAATGTCGCAGACAATGCCTGGAATGTTTCCTAATATGTTCCCCTTTGGGAATGCACAGTTTGGAGGTCTTCCCGTGATGCCAGTGCAAGCAATGACACAACAGGCAACTCGTCATGCCCGACGGGTATATGTTGGTGGTCTTCCACCAATGGCTAATGAGCAGACAATTGCTACATATTTTAGTCGCGTTATGGCTGCTATAGGAGGAAATACTGCTGGGCCAGGTGATGCTGTTGTTAATGTCTACATCAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGCGCACAGTTGAAGAGGCCAGCAATGCAATGGCTCTTGATGGTATAATGTTTGAGGGCGTTTCTGTGAGAGTGAGGAGACCAAGTGATTACAATCCCTCATTGGCAGCAGCACTTGGCCCAAGCCAACCCAGTCCCCACCTAAATTTAGCTGCTGTTGGTCTCACACCAGGCTATGGCAGTGCTGTTGGAGGAGCTGAGGGACCTGATAGAATATTTGTTGGTGGCTTACCGTATTACTTCACTGAAGCACAGATAAGAGAACTGCTTGAATCCTTTGGGCCTCTTCGTGGTTTTGATCTCGTTAAGGATAGAGATACGGGTAATTCAAAGGGCTATGGCTTTTGTGTTTACCAGGATCCAGCTGTGACAGACATTGCATGTGCTGCTCTTAATGGGCTTAAAATGGGTGATAAGACTTTGACTGTGCGCCGTGCTACTGCCAGTGGTCAGCCAAAACCAGACCAGGAGAATGTCTTAGCACAGGCTCAACAGCATATAGCTTTACAGAAGCTTGCACTGCAAGTTGGAAGTGGTGTACCTGGTTTGTTTCCAGCTCTTGGCCCCCAGAAACACCTACAAAAGTTGTTTCCTTGA___CACAGGTTGTGTCAGCAGATGAGCTGAGGGATGATGAAGAGTATGAGGAGATACTAGAAGACATGAGAGAAGAATGTGGAAAATATGGATCAATAGTAAATCTTGTTATCCCCCGTCCTGATCCAAGTGGAGAATCACGTCCTGGGGTTGGAAAGGTGTTTGTGGAATTTTCGGATACTGAAAGTTCTGGCAAGGCAAAAGCTGCGCTGAATGGAAGGAAGTTCGGTGGGAATACTGTTGTTGCAATATATTACCCGGAAGACAAATTCTCTATGGGTGAATACGATTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCTTTCTGTATATTATGGATTTGCTTAATGATGGGGTGATTATTAAGAGCAGTTTTGTATATTAGAGCTTTCATGATTGACAGAAAATTCTATGCTACACTTATTGCATGCAATATTTTATGATATTCCTTGTTTTATTCTGTATTAGGCAAAAATTGGCATTTGGATAAATACCAATGGCTTGGACCTAATCTTTGCCTCACTGTTGAAGAGAATGCAACACTTCCTATGTTTGTTGCATATTAATTGATTTAACAGCATATGTTCGGCCTGTTACACCCCCTTTCTGTATATTATGGATTTGCTTAATGACATT

Fln Alignment:

Contig10672___RVYVGGLPPMANEQTIATYFSRVMAAIGGNTAGPGDAVVNVY---INHEKKFAFVEMRTVEEASNAMA-LDGIMFEGVSVRVRRPSDYNPSLAAALGPSQPSPHLNLAAVGLTPGYGSAVGGAEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRDTGNSKGYGFCVYQDPAVTDIACAALNGLKMGDKTLTVRRA
A9P1T0__________________KLYVGNLPFDIDSEGLAKMFDE---------SGVVEMVEVIYDRSSGRSRGFAFVTMSTVEEAEAAIKKFNGFEIDGRSLRVNFPEV--PRLQNGRSPARSPSNFG--------------GFVDSPHKVYVGNLAWSVTSETLREALNGKGNVLGAKVIQDRETGRSRGFGFVSFSSEAEVEAAVSEMDGLEVEGRSIRVNVA

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
377	33		66		0.997452
462		80		20	0.995493
778	75			25	0.996473
888	25			75	0.996473
889	75	25			0.996473
891			83	16	0.994512
892	83			16	0.994512
896			80	20	0.995493
897		80		20	0.995493
940	75		25		0.996473
1069		25		75	0.996473
1070	25			75	0.996473
1071		75		25	0.996473
1075	20	80			0.995493
1077			80	20	0.995493
1122	25	75			0.996473
1125	75	25			0.996473
1170	12		87		0.992554
1173			87	12	0.992554
1197	12	87			0.992554
1231	88			11	0.923564
1232		88	11		0.923564
1233	88			11	0.923564
1338	12	87			0.992554
1341			87	12	0.992554
1348	12	87			0.992554
1389	12		87		0.992554
1390		12		87	0.992554
1392			87	12	0.992554
1393		87		12	0.992554
1503	87	12			0.992554
1505		87		12	0.992554
1579			85	14	0.993533
1585	14	85			0.993533
1586		85		14	0.993533
1587			85	14	0.993533
1602	16		83		0.994512
1605			83	16	0.994512
1606		83		16	0.994512
1611	16		83		0.994512
1650		20	80		0.995493
1652			80	20	0.995493
1653			80	20	0.995493
1706		14	85		0.993533
1707	14	85			0.993533
1708			85	14	0.993533
1718	12	87			0.992554
1719	12	87			0.992554
1801	12		87		0.992554
1803	12	87			0.992554
1804		88		11	0.923564
1810	12	87			0.992554
1812	12	87			0.992554
1814			87	12	0.992554
1828			87	12	0.992554
1896	16		83		0.994512
1899	20	80			0.995493
1917	25		75		0.996473
1919	25		75		0.996473
2083	11			88	0.923564
2084		11		88	0.923564
2127	14			85	0.993533
2128	85	14			0.993533
2156		16		83	0.994512
2158		83		16	0.994512
2159			83	16	0.994512
2200	66			33	0.997452
2201	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain